Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   DSM104440_RS17005 Genome accession   NZ_CP053073
Coordinates   3489444..3490928 (+) Length   494 a.a.
NCBI ID   WP_171164729.1    Uniprot ID   A0A6M4HAG1
Organism   Usitatibacter palustris strain Swamp67     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3484444..3495928
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DSM104440_RS16980 (DSM104440_03371) amt 3484958..3486490 (-) 1533 WP_171164719.1 ammonium transporter -
  DSM104440_RS16985 (DSM104440_03372) glnK 3486504..3486842 (-) 339 WP_171164721.1 P-II family nitrogen regulator -
  DSM104440_RS16990 (DSM104440_03373) - 3486879..3487652 (-) 774 WP_171164723.1 TorF family putative porin -
  DSM104440_RS16995 (DSM104440_03374) - 3487856..3488095 (+) 240 WP_171164725.1 accessory factor UbiK family protein -
  DSM104440_RS17000 (DSM104440_03375) - 3488103..3489260 (-) 1158 WP_171164727.1 tectonin domain-containing protein -
  DSM104440_RS17005 (DSM104440_03376) comM 3489444..3490928 (+) 1485 WP_171164729.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  DSM104440_RS17010 (DSM104440_03377) - 3490986..3492611 (+) 1626 WP_171164731.1 peptide chain release factor 3 -
  DSM104440_RS17015 (DSM104440_03378) - 3492664..3494106 (-) 1443 WP_171164733.1 thiol-activated cytolysin family protein -

Sequence

Protein


Download         Length: 494 a.a.        Molecular weight: 52731.46 Da        Isoelectric Point: 9.0683

>NTDB_id=442745 DSM104440_RS17005 WP_171164729.1 3489444..3490928(+) (comM) [Usitatibacter palustris strain Swamp67]
MALAVVYSRGLEGLDAPLVRVEAHAAGGLPAFNIVGLPAAEVKEARDRVRAALNTARFKFPNGRVTVSLAPADLPKESGR
FDLPIAIGILAATDQIKRKILDQHEFAGELALSGELRSIRGALAMTYGAKRDGRAFVVPESVADEAVLARGATVLPARTL
LQVCAHLSGETPLVAYESRTASTAVEYPDLEDVRGQAQARRALEVAAAGGHSLLMRGPPGTGKSMLALRLPGILPALSED
EALQSAAIQSLGSTGFRADRFGQRAFRNPHHSASAVALVGGGSPPRPGEVSLAHHGVLFLDELPEFERRVLEMLREPLDA
GAITISRAARQADFPARFQLVAAMNPCPCGYLGHFTNQCRCTPDRIASYNRRISGPLLDRIDLRVEVCAVAPSALVRSPP
GESSERVRERVAAARAVQIARQGVVNAALHSKALDRWCVLDDDGSSLLLDAVARLGLSARACHRVLRVARTVADLEGRER
IGRPHVAEAIQYRG

Nucleotide


Download         Length: 1485 bp        

>NTDB_id=442745 DSM104440_RS17005 WP_171164729.1 3489444..3490928(+) (comM) [Usitatibacter palustris strain Swamp67]
GTGGCACTTGCCGTCGTCTATAGCCGCGGTCTCGAAGGGCTCGATGCGCCGCTCGTTCGCGTTGAAGCGCATGCGGCCGG
TGGGTTGCCCGCGTTCAATATCGTGGGACTTCCCGCCGCGGAAGTGAAGGAAGCGCGCGATCGCGTGCGTGCGGCGCTGA
ACACCGCGCGGTTCAAGTTCCCCAACGGGCGCGTCACCGTGAGCCTCGCACCGGCTGACCTGCCGAAGGAAAGCGGGCGC
TTCGATCTTCCGATCGCGATCGGGATCCTCGCCGCGACGGACCAGATCAAGCGAAAGATCCTCGACCAGCACGAGTTCGC
GGGAGAGCTCGCACTCTCGGGCGAGTTGCGGTCCATTCGCGGCGCACTCGCGATGACGTATGGCGCGAAGCGCGATGGGC
GCGCATTCGTGGTTCCGGAATCCGTGGCCGACGAAGCGGTGCTCGCGCGCGGCGCGACGGTGCTTCCCGCGCGTACGTTG
CTGCAGGTCTGCGCGCACCTGTCGGGTGAGACGCCGCTCGTCGCGTACGAGAGCCGCACCGCCAGCACGGCCGTCGAGTA
TCCCGACCTCGAAGACGTGCGCGGCCAGGCGCAGGCGCGGCGCGCGCTGGAAGTCGCGGCCGCCGGTGGACACTCCCTGT
TGATGCGCGGGCCGCCGGGCACCGGCAAGTCGATGCTCGCGTTGCGGCTGCCGGGAATCCTTCCGGCGCTGAGCGAGGAC
GAAGCATTGCAATCCGCGGCGATCCAGAGCCTGGGCAGCACCGGGTTTCGCGCCGATCGGTTCGGGCAGCGCGCATTTCG
CAATCCGCATCACAGCGCGTCGGCCGTCGCGCTCGTTGGCGGTGGCTCCCCGCCGCGGCCCGGAGAAGTCTCGCTCGCGC
ATCACGGCGTTCTCTTCCTCGACGAGCTGCCGGAGTTCGAGCGGCGCGTGCTCGAGATGCTGCGCGAGCCGCTCGATGCC
GGCGCGATCACGATCTCGCGCGCCGCACGCCAGGCGGATTTCCCCGCGCGCTTCCAGCTCGTGGCTGCAATGAATCCGTG
TCCCTGCGGATATCTCGGCCACTTCACGAACCAATGCCGCTGCACGCCCGACCGCATCGCGAGCTACAACCGGCGCATCT
CCGGCCCACTGCTCGATCGCATCGACCTGCGCGTGGAGGTCTGCGCCGTCGCACCTTCCGCGCTCGTGCGCTCGCCGCCC
GGGGAAAGCTCGGAGCGTGTGCGAGAACGCGTTGCCGCCGCGCGCGCCGTGCAGATCGCGCGACAGGGCGTCGTCAACGC
CGCACTCCACTCGAAGGCACTCGATCGCTGGTGCGTTCTCGACGACGACGGTTCGTCGTTATTGCTCGATGCCGTCGCTC
GCCTGGGCCTGTCGGCACGGGCGTGCCATCGCGTGCTGCGGGTCGCGCGGACGGTCGCCGATCTGGAAGGTCGCGAGCGC
ATCGGGCGCCCGCACGTCGCGGAGGCGATCCAATATCGCGGCTAG

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-493)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-391)

Subunit ChlI of Mg-chelatase (ChlI)

(21-140)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6M4HAG1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

52.121

100

0.522
  comM Haemophilus influenzae Rd KW20

50.8

100

0.514
  comM Vibrio campbellii strain DS40M4

50.505

100

0.506
  comM Glaesserella parasuis strain SC1401

49.499

100

0.5
  comM Legionella pneumophila str. Paris

46.6

100

0.472
  comM Legionella pneumophila strain ERS1305867

46.6

100

0.472
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

41.782

100

0.427