Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   DSM104443_RS19215 Genome accession   NZ_CP053069
Coordinates   4046136..4047626 (+) Length   496 a.a.
NCBI ID   WP_171095169.1    Uniprot ID   -
Organism   Usitatibacter rugosus strain 0125_3     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4041136..4052626
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DSM104443_RS19195 (DSM104443_03809) amt 4042934..4044469 (-) 1536 WP_171095162.1 ammonium transporter -
  DSM104443_RS19200 (DSM104443_03810) glnK 4044484..4044822 (-) 339 WP_076019699.1 P-II family nitrogen regulator -
  DSM104443_RS19205 (DSM104443_03811) - 4044856..4045656 (-) 801 WP_171095164.1 TorF family putative porin -
  DSM104443_RS19210 (DSM104443_03812) - 4045868..4046113 (+) 246 WP_171095167.1 accessory factor UbiK family protein -
  DSM104443_RS19215 (DSM104443_03813) comM 4046136..4047626 (+) 1491 WP_171095169.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  DSM104443_RS19220 (DSM104443_03814) - 4047626..4048885 (+) 1260 WP_171095171.1 multidrug effflux MFS transporter -
  DSM104443_RS19225 (DSM104443_03815) - 4048779..4050317 (+) 1539 WP_281359535.1 tetratricopeptide repeat protein -

Sequence

Protein


Download         Length: 496 a.a.        Molecular weight: 52449.02 Da        Isoelectric Point: 9.5540

>NTDB_id=442675 DSM104443_RS19215 WP_171095169.1 4046136..4047626(+) (comM) [Usitatibacter rugosus strain 0125_3]
MSVAVVFSRGLAGLDAPLVRVEAHVGGGLPQFHIVGLPDTEVKEARDRVRAALATSHFKFPAGRVIVNLAPADLPKESGR
FDLPIAIGILAATEQVKTDHLAEHEFAGELALSGELRPIRGALAMTYCAHRDGRSFVLPASVAEEAGLARGATVRPARTL
LEVCAHLSGQASLPIHEAKAVRGEPTYPDMADVAGQATARRALEIAAAGGHSLLLCGPPGTGKTMLALRFPGILPAMSED
EALEAAAVQSLASAGFHPERFGTRAFRSPHHTASAIALVGGGSPPRPGEISLAHHGVLFLDELPEFDRRVLEVLREPLES
GAITISRAAQQADFPARFQLVAAMNPCPCGYLGDSRNPCKCTPTQVQRYRSRISGPLLDRIDLHVNLHAVAAAELSSKAG
EASSLVRRRAAGARARQVARQGVANARVPSSQVDSRMRPDARGLQMLRNAASQLGLSARAHHRVLRVARTVADLEGSDAL
AGRHVAEALAYRGLRS

Nucleotide


Download         Length: 1491 bp        

>NTDB_id=442675 DSM104443_RS19215 WP_171095169.1 4046136..4047626(+) (comM) [Usitatibacter rugosus strain 0125_3]
GTGTCCGTTGCCGTCGTCTTCAGCCGGGGCCTCGCCGGCCTCGATGCGCCGCTCGTGCGCGTCGAGGCGCACGTCGGCGG
CGGGCTGCCGCAGTTCCACATCGTCGGCTTGCCCGACACGGAGGTGAAGGAGGCGAGAGACCGCGTCCGCGCGGCGCTGG
CCACTTCGCACTTCAAGTTTCCCGCGGGTCGCGTCATCGTGAACCTCGCGCCGGCCGATCTCCCCAAGGAAAGCGGCCGC
TTCGACCTCCCGATCGCCATCGGCATCCTCGCGGCCACCGAACAAGTGAAGACCGATCACCTGGCCGAGCATGAATTCGC
CGGGGAGCTCGCGTTGTCCGGAGAGCTCCGCCCGATCCGCGGCGCGCTCGCCATGACGTACTGTGCCCACCGCGACGGGC
GTTCCTTCGTATTGCCCGCTTCGGTCGCGGAGGAAGCCGGCCTCGCGCGCGGCGCCACGGTTCGCCCGGCGCGCACGCTG
CTCGAGGTGTGCGCGCATCTCTCCGGCCAGGCTTCGCTTCCCATCCACGAAGCGAAGGCCGTTCGCGGCGAGCCCACGTA
TCCCGACATGGCGGATGTCGCTGGCCAGGCCACGGCGCGGCGCGCGCTGGAGATCGCGGCCGCCGGTGGCCACTCGCTGT
TGCTGTGCGGCCCTCCGGGCACGGGCAAGACGATGCTCGCCCTGCGCTTCCCCGGCATACTGCCGGCCATGTCGGAAGAT
GAAGCGCTCGAAGCCGCGGCCGTGCAAAGCCTTGCCAGCGCGGGCTTCCATCCGGAGCGCTTCGGGACCCGCGCTTTCCG
CAGCCCGCACCACACCGCCTCGGCCATCGCGCTCGTGGGCGGCGGCTCGCCGCCGCGTCCCGGCGAGATCTCGCTCGCGC
ACCACGGCGTGCTGTTCCTGGACGAGCTGCCGGAATTCGACCGGCGCGTCCTCGAGGTGCTGCGCGAGCCTCTCGAATCG
GGCGCCATCACGATCTCTCGCGCGGCCCAGCAGGCGGATTTCCCCGCGCGCTTCCAGTTGGTCGCCGCGATGAACCCCTG
CCCCTGCGGCTACCTCGGCGATTCGCGCAATCCCTGCAAGTGCACGCCCACGCAAGTGCAGCGTTACCGCTCGCGCATCT
CGGGCCCGCTGCTGGACCGCATCGATCTGCATGTGAACCTCCACGCCGTCGCCGCGGCCGAGCTCTCGTCGAAGGCGGGC
GAGGCTTCGAGCCTCGTGCGCCGTCGCGCCGCGGGGGCAAGGGCTCGCCAGGTCGCGCGCCAGGGCGTGGCGAACGCGCG
CGTGCCTTCGTCGCAAGTGGATTCCCGCATGCGCCCCGATGCGCGGGGTCTCCAGATGCTGCGCAATGCCGCGTCGCAAC
TCGGGCTTTCGGCGCGCGCCCACCACCGCGTGCTTCGCGTGGCGCGCACCGTCGCCGACCTCGAAGGCTCCGATGCGCTC
GCCGGCCGGCACGTCGCCGAGGCCCTCGCCTATCGCGGCCTGCGCTCCTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-394)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)

Subunit ChlI of Mg-chelatase (ChlI)

(21-140)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

50.503

100

0.506
  comM Vibrio cholerae strain A1552

50

100

0.504
  comM Haemophilus influenzae Rd KW20

49.004

100

0.496
  comM Glaesserella parasuis strain SC1401

48.104

100

0.486
  comM Legionella pneumophila str. Paris

48.387

100

0.484
  comM Legionella pneumophila strain ERS1305867

48.387

100

0.484
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.141

100

0.437