Detailed information NTG0442622

Bioinformatically predicted

Overview

• Name: comM
• Type: Machinery gene
• Locus tag: HKW97_RS03470
• Genome accession: NZ_CP053063
• Coordinates: 717832..718896 (+)
• Length: 354 a.a.
• NCBI ID: WP_407362833.1
• Uniprot ID: -
• Organism: Pseudomonas luteola strain JZ42
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 712832..723896

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HKW97_RS03455 (HKW97_03440)	rpmE	713176..713394 (+)	219	WP_010797026.1	50S ribosomal protein L31	-
HKW97_RS03460 (HKW97_03445)	-	713910..715178 (+)	1269	WP_407362831.1	malic enzyme-like NAD(P)-binding protein	-
HKW97_RS03465 (HKW97_03450)	-	715224..717650 (-)	2427	WP_407362832.1	penicillin-binding protein 1A	-
HKW97_RS03470 (HKW97_03455)	comM	717832..718896 (+)	1065	WP_407362833.1	pilus assembly protein PilM	Machinery gene
HKW97_RS03475 (HKW97_03460)	-	718896..719483 (+)	588	WP_010797031.1	PilN domain-containing protein	-
HKW97_RS03480 (HKW97_03465)	pilO	719480..720103 (+)	624	WP_010797032.1	type 4a pilus biogenesis protein PilO	-
HKW97_RS03485 (HKW97_03470)	pilP	720100..720624 (+)	525	WP_407362834.1	type 4a pilus biogenesis lipoprotein PilP	-
HKW97_RS03490 (HKW97_03475)	pilQ	720634..722763 (+)	2130	WP_407362835.1	type IV pilus secretin PilQ	Machinery gene
HKW97_RS03495 (HKW97_03480)	aroK	722769..723287 (+)	519	WP_219650794.1	shikimate kinase AroK	-

Sequence

Protein

• Length: 354 a.a.
• Molecular weight: 37890.31 Da
• Isoelectric Point: 4.6190

>NTDB_id=442622 HKW97_RS03470 WP_407362833.1 717832..718896(+) (comM) [Pseudomonas luteola strain JZ42]
MLGLFKKKTNTLLGIDISSTSVKLLELSRAGGRYRVEAYAVEPLPPNAVVEKNIAELEGVGQALGRVLAKARTNARNAAV
AVAGSAVIAKTIEMDAGLSDDELENQIKLEADQYIPYPLEEVAIDFEVQGQSARNPGRVEVLLAACRKENVEVREAALAL
AGLSAKVIDVEAYALERAYTLMAGQLGGNVDELTVAIVDIGATMTTLSVLHNGRTIYTREQLFGGRQLTEEIQRRYGLSV
EEAGLAKKQGGLPDDYQVEVLTPFRDAVVQQVARSLQFFFAAGQYNDVDYILLAGGTASISGLDRLIQQKIGTPTLVANP
FADMTLNSKVNASALASDAPALMIACGLAMRSFD

Nucleotide

• Length: 1065 bp

>NTDB_id=442622 HKW97_RS03470 WP_407362833.1 717832..718896(+) (comM) [Pseudomonas luteola strain JZ42]
GTGCTAGGGCTATTCAAAAAGAAGACGAATACGCTACTGGGAATCGATATCAGCTCAACGTCTGTCAAGTTGCTTGAGCT
GAGTCGTGCTGGTGGACGGTATAGGGTCGAAGCCTATGCCGTTGAGCCGTTGCCGCCGAACGCCGTGGTGGAAAAGAACA
TTGCCGAGCTTGAAGGCGTAGGGCAAGCGCTGGGCCGGGTTCTGGCCAAGGCTCGAACGAATGCTCGAAATGCAGCAGTG
GCGGTAGCGGGTTCGGCTGTTATTGCAAAGACCATCGAAATGGATGCGGGTCTTTCGGATGACGAGCTTGAAAACCAGAT
CAAGCTTGAGGCGGATCAGTATATTCCTTATCCCCTTGAGGAAGTGGCGATTGACTTCGAGGTTCAAGGCCAGTCGGCGC
GTAATCCAGGCCGTGTTGAAGTGCTCCTTGCGGCATGTCGCAAGGAGAACGTTGAAGTTCGTGAGGCCGCGTTAGCGTTG
GCCGGGCTTTCCGCCAAGGTTATTGATGTAGAAGCTTATGCTCTTGAGCGTGCTTATACGCTAATGGCCGGGCAGCTAGG
CGGTAATGTCGATGAATTGACGGTTGCGATTGTTGATATTGGCGCCACGATGACTACCCTTAGCGTTCTGCATAATGGCC
GTACCATTTATACGCGCGAGCAGCTCTTTGGCGGACGGCAGCTGACCGAAGAAATCCAGCGTCGTTACGGACTCTCCGTC
GAGGAAGCCGGTCTTGCCAAAAAGCAGGGTGGACTGCCTGATGATTATCAGGTCGAAGTATTGACCCCCTTCCGGGATGC
GGTTGTCCAGCAGGTTGCCCGCTCACTGCAATTCTTCTTTGCAGCCGGACAATACAATGATGTGGACTATATCTTGCTTG
CGGGAGGAACTGCGTCAATTTCCGGCCTGGATCGGCTGATCCAACAGAAAATTGGCACTCCGACCCTAGTTGCTAATCCG
TTTGCTGATATGACGCTAAATAGCAAAGTCAATGCAAGTGCTCTGGCCAGCGACGCTCCGGCGCTCATGATTGCCTGCGG
TCTGGCTATGAGGAGCTTCGACTGA

Domains

Predicted by InterproScan.

• Type IV pilus assembly protein PilM; (PilM_2) (14-353)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comM	Acinetobacter nosocomialis M2	58.427	100	0.588
pilM	Acinetobacter baumannii D1279779	58.146	100	0.585
comM	Acinetobacter baylyi ADP1	55.65	100	0.557
pilM	Legionella pneumophila strain ERS1305867	45.48	100	0.455