Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   HIR79_RS00590 Genome accession   NZ_CP053032
Coordinates   114631..116133 (-) Length   500 a.a.
NCBI ID   WP_169956017.1    Uniprot ID   A0A6M4FS86
Organism   Halomonas sp. PGE1     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 109631..121133
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HIR79_RS00565 (HIR79_00565) - 109763..110143 (+) 381 WP_169956011.1 DUF423 domain-containing protein -
  HIR79_RS00570 (HIR79_00570) - 110174..110587 (-) 414 WP_119022685.1 PaaI family thioesterase -
  HIR79_RS00575 (HIR79_00575) - 110727..112901 (-) 2175 WP_169956013.1 malate synthase G -
  HIR79_RS00580 (HIR79_00580) - 113137..114124 (+) 988 Protein_114 alpha/beta hydrolase -
  HIR79_RS00585 (HIR79_00585) - 114121..114618 (+) 498 WP_169956015.1 hypothetical protein -
  HIR79_RS00590 (HIR79_00590) comM 114631..116133 (-) 1503 WP_169956017.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  HIR79_RS00595 (HIR79_00595) - 116200..116526 (-) 327 WP_169956019.1 accessory factor UbiK family protein -
  HIR79_RS00600 (HIR79_00600) - 116806..117144 (+) 339 WP_119023403.1 P-II family nitrogen regulator -
  HIR79_RS00605 (HIR79_00605) - 117172..118422 (+) 1251 WP_169956021.1 ammonium transporter -
  HIR79_RS00610 (HIR79_00610) glnK 118570..118908 (+) 339 WP_110069051.1 P-II family nitrogen regulator -
  HIR79_RS00615 (HIR79_00615) - 119002..119778 (-) 777 WP_119023100.1 ferredoxin--NADP reductase -
  HIR79_RS00620 (HIR79_00620) - 119939..120865 (+) 927 WP_119023101.1 LysR family transcriptional regulator -

Sequence

Protein


Download         Length: 500 a.a.        Molecular weight: 53534.87 Da        Isoelectric Point: 8.1354

>NTDB_id=442312 HIR79_RS00590 WP_169956017.1 114631..116133(-) (comM) [Halomonas sp. PGE1]
MTLAIVHTRAGLGLEAPEVQVEVHLANGLPGMTLVGLPEAAVKESRERVRSALVNAGFDYPLRRITLNLAPADLPKEGGR
FDLPIALGLLLASGQLPPEALADIESVGELALDGGLRPITGVLPLALATRRARRRLIVPRANAEEAALAGDLEVLPADHL
LDVVAHLLGQTPIAPHRLASPPEAATSLPDLAEVRGQYQARRALEVAAAGSHNLLFAGPPGTGKTMLASRLPGILPPLTE
EEALEVAAVRSVSGLPLAAEWGRRPFRAPHHTASAVALVGGGSKPRPGEISLAHHGVLFLDELPEFSRHVLEVMREPMES
GQIHIARASHQRRFPARFQLVAAMNPCPCGHLGDPRQACHCTAAQIQRYQARLSGPLLDRIDLQVEVPALPPEQLTAATT
GESSAIVRRRVMAARERQLARGALNAHLAGRELEAACDLASADRAWLAQVLERLRLSARAYHRVLRVALTLADLAGEPKP
AREQLIEAIGYRQLDRLLKG

Nucleotide


Download         Length: 1503 bp        

>NTDB_id=442312 HIR79_RS00590 WP_169956017.1 114631..116133(-) (comM) [Halomonas sp. PGE1]
ATGACGCTGGCGATCGTCCATACCCGTGCGGGCCTCGGCCTCGAGGCCCCCGAGGTGCAGGTGGAGGTGCATCTGGCCAA
TGGCCTGCCGGGGATGACCCTGGTGGGGCTGCCGGAGGCGGCGGTGAAGGAGAGCCGCGAGCGGGTGCGCAGCGCCCTGG
TCAACGCCGGCTTCGACTACCCCCTGCGCCGCATCACCCTCAACCTGGCTCCCGCCGACCTGCCCAAGGAGGGTGGGCGC
TTCGACCTGCCCATCGCCCTGGGACTGCTGCTGGCCTCGGGGCAGCTGCCCCCGGAGGCCCTGGCGGACATCGAGAGCGT
CGGCGAGCTGGCCCTGGACGGTGGCCTGCGCCCGATCACCGGTGTGCTGCCCCTGGCCCTGGCCACCCGCCGTGCCAGGC
GGCGGCTGATCGTGCCCCGGGCCAACGCCGAGGAGGCGGCGCTCGCCGGCGACCTCGAGGTGCTGCCCGCCGACCACCTG
CTGGACGTGGTCGCTCATCTGCTGGGCCAGACGCCCATCGCGCCGCACCGGCTGGCGTCTCCGCCGGAGGCGGCGACATC
GCTGCCCGATCTCGCCGAGGTGCGCGGCCAGTACCAGGCGCGCCGCGCCCTGGAGGTGGCCGCCGCGGGCTCCCACAACC
TGCTCTTCGCCGGCCCGCCGGGCACTGGCAAGACCATGCTGGCCAGCCGCCTGCCGGGCATCCTGCCGCCGCTGACCGAG
GAGGAGGCGCTGGAGGTGGCGGCGGTGCGTTCGGTCAGCGGCCTGCCGCTGGCCGCCGAGTGGGGTCGCCGCCCCTTTCG
GGCGCCGCACCATACCGCCAGCGCCGTGGCCCTGGTAGGCGGCGGCTCGAAGCCGCGACCCGGAGAGATCTCGCTGGCCC
ACCACGGGGTGCTGTTCCTCGACGAGCTGCCGGAGTTCTCGCGCCACGTGCTGGAGGTGATGCGCGAGCCCATGGAATCG
GGCCAGATCCATATCGCCCGGGCCAGCCACCAGCGCCGCTTTCCGGCTCGCTTCCAGCTGGTGGCGGCCATGAATCCCTG
CCCCTGCGGCCATCTGGGGGACCCGCGGCAGGCCTGCCACTGCACCGCGGCCCAGATCCAGCGCTACCAGGCGCGGCTCT
CCGGGCCGCTGCTCGATCGCATCGACCTGCAGGTGGAGGTGCCGGCGCTGCCGCCGGAGCAGCTCACGGCGGCGACGACG
GGGGAGTCCTCGGCGATCGTCCGCCGGCGGGTGATGGCCGCGCGGGAACGGCAGCTGGCGCGGGGGGCGCTGAATGCCCA
CCTGGCGGGGCGGGAGCTGGAGGCGGCCTGCGACCTCGCCAGCGCCGACCGGGCCTGGCTGGCGCAGGTGCTGGAGCGGC
TCAGGCTCTCGGCGCGGGCCTACCACCGGGTGCTGCGGGTGGCGCTGACCCTGGCCGACCTGGCCGGCGAGCCGAAGCCG
GCCCGGGAGCAGCTGATCGAGGCGATCGGCTATCGGCAGCTGGATCGGCTGCTCAAGGGGTAG

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-492)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-394)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6M4FS86

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

56.175

100

0.564
  comM Vibrio cholerae strain A1552

55.976

100

0.562
  comM Haemophilus influenzae Rd KW20

54.635

100

0.554
  comM Glaesserella parasuis strain SC1401

53.937

100

0.548
  comM Legionella pneumophila str. Paris

50.299

100

0.504
  comM Legionella pneumophila strain ERS1305867

50.299

100

0.504
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

47.244

100

0.48