NTDB

Overview

Name	dprA	Type	Machinery gene
Locus tag	HJ586_RS19180	Genome accession	NZ_CP053014
Coordinates	4273934..4275067 (+)	Length	377 a.a.
NCBI ID	WP_023640864.1	Uniprot ID	-
Organism	Dickeya zeae strain MS_2018
Function	ssDNA binding; loading RecA onto ssDNA (predicted from homology) DNA processing

Genomic Context

Location: 4268934..4280067

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HJ586_RS19155 (HJ586_19170)	mscL	4269029..4269454 (-)	426	WP_016943910.1	large-conductance mechanosensitive channel protein MscL	-
HJ586_RS19160 (HJ586_19175)	trkA	4269560..4270936 (-)	1377	WP_019845206.1	Trk system potassium transporter TrkA	-
HJ586_RS19165 (HJ586_19180)	rsmB	4270979..4272274 (-)	1296	WP_019845207.1	16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB	-
HJ586_RS19170 (HJ586_19185)	fmt	4272333..4273274 (-)	942	WP_236305493.1	methionyl-tRNA formyltransferase	-
HJ586_RS19175 (HJ586_19190)	def	4273312..4273821 (-)	510	WP_012886331.1	peptide deformylase	-
HJ586_RS19180 (HJ586_19195)	dprA	4273934..4275067 (+)	1134	WP_023640864.1	DNA-protecting protein DprA	Machinery gene
HJ586_RS19185 (HJ586_19200)	-	4275039..4275512 (+)	474	WP_012886329.1	DUF494 family protein	-
HJ586_RS19190 (HJ586_19205)	-	4275532..4276083 (+)	552	WP_023640863.1	type I DNA topoisomerase	-
HJ586_RS19195 (HJ586_19210)	tsaC	4276076..4276645 (+)	570	WP_152494875.1	L-threonylcarbamoyladenylate synthase type 1 TsaC	-
HJ586_RS19200 (HJ586_19215)	aroE	4276664..4277491 (+)	828	WP_236305494.1	shikimate dehydrogenase	-
HJ586_RS19205 (HJ586_19220)	-	4277488..4277760 (+)	273	WP_236305495.1	DUF1488 domain-containing protein	-
HJ586_RS19210 (HJ586_19225)	-	4277782..4278327 (-)	546	WP_023640859.1	gamma carbonic anhydrase family protein	-

Sequence

Protein

Download Length: 377 a.a. Molecular weight: 40749.67 Da Isoelectric Point: 6.1730

                                >NTDB_id=442123 HJ586_RS19180 WP_023640864.1 4273934..4275067(+) (dprA) [Dickeya zeae strain MS_2018]

MMDTEIWLRLASVKGLGAKRCALVFSQLQAENSYLAEHLKALGLTQNQTEQFFGLSDLDVQNTIGWLEKPAHHLVTFGSA

NYPPLLSNIASPPACLYVIGELNLLSSPQIAVVGSRNNSAYGEQWGHFFSEQLSQNRLTVTSGLAVGIDGIAHRAALQAE

GKTLAVLGSGLRRLYPRRHVALADAIVAQGGALVSEFPLNTPPLPVNFPRRNRIISGLSLGVLVVEASLRSGSLVTARYA

LEQNREVFALPGPIGNPMTEGNHWLIQQGATLVTQPQDIFEQLHNGLRWFADIPNEGVPEIICATEGELELPFADVLATV

GDEVTPVDVVAERAGQPVPEVVTKLLDLELAGWIAAVPGGYVRIRRAGHVRRTHVLV

Nucleotide

Download Length: 1134 bp

                                >NTDB_id=442123 HJ586_RS19180 WP_023640864.1 4273934..4275067(+) (dprA) [Dickeya zeae strain MS_2018]

ATGATGGATACGGAAATCTGGTTGCGTCTGGCGTCGGTTAAGGGGCTTGGAGCCAAACGCTGTGCGCTAGTGTTCAGCCA

ATTGCAGGCCGAGAATTCGTATTTGGCCGAACATCTGAAAGCGTTAGGTTTGACGCAAAATCAGACCGAGCAATTTTTCG

GCCTGAGCGACTTGGATGTACAGAATACCATCGGCTGGTTGGAAAAGCCGGCCCATCACCTGGTGACATTTGGCAGCGCC

AATTATCCTCCACTGCTCAGTAACATTGCTTCTCCCCCGGCATGTTTGTATGTCATTGGAGAGCTAAACCTCCTGTCATC

TCCGCAAATCGCGGTGGTGGGTAGCCGTAACAATAGTGCTTATGGCGAACAGTGGGGACATTTCTTTAGCGAACAACTCA

GCCAAAATCGTTTGACAGTAACCAGTGGGCTGGCCGTCGGTATTGATGGGATTGCCCATCGAGCCGCTTTACAGGCAGAA

GGAAAAACCCTTGCCGTCTTAGGAAGTGGATTACGTCGACTTTACCCCCGCCGACATGTGGCGTTAGCGGATGCCATCGT

GGCGCAGGGTGGTGCTCTGGTGTCGGAATTCCCTCTAAATACACCGCCGCTGCCGGTAAACTTTCCTCGCCGTAATCGCA

TCATCAGTGGATTAAGTCTGGGGGTTCTGGTCGTAGAGGCGTCACTGCGTAGTGGATCGCTGGTGACGGCGCGTTATGCA

TTGGAACAGAATCGTGAGGTTTTTGCCTTGCCTGGTCCGATCGGCAATCCGATGACGGAGGGTAACCACTGGCTGATACA

ACAAGGCGCAACTTTGGTTACTCAGCCTCAGGACATTTTTGAACAACTCCATAATGGGCTGCGTTGGTTTGCCGATATTC

CCAATGAGGGCGTTCCTGAAATTATTTGTGCGACGGAAGGTGAACTGGAATTGCCATTTGCTGATGTGTTGGCTACCGTA

GGAGATGAGGTTACACCTGTTGACGTTGTCGCTGAACGTGCCGGCCAACCTGTGCCAGAGGTGGTGACTAAGTTACTGGA

TCTGGAGTTAGCAGGGTGGATCGCAGCTGTACCCGGCGGCTATGTCCGTATAAGGAGGGCAGGCCATGTTCGACGTACTC

ATGTACTTGTTTGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(67-274)

DprA winged helix domain (DprA_WH)

(309-360)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
dprA	Vibrio campbellii strain DS40M4	49.185	97.613	0.48
dprA	Vibrio cholerae strain A1552	45.946	98.143	0.451
dprA	Glaesserella parasuis strain SC1401	42.896	97.082	0.416
dprA	Neisseria meningitidis strain C311	37.34	100	0.387
dprA	Neisseria meningitidis MC58	37.34	100	0.387
dprA	Legionella pneumophila strain ERS1305867	44.918	80.902	0.363

Detailed information NTG0442123