Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   HJ580_RS18475 Genome accession   NZ_CP053013
Coordinates   4171103..4172236 (-) Length   377 a.a.
NCBI ID   WP_102802437.1    Uniprot ID   -
Organism   Dickeya zeae strain MS_2014     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 4166103..4177236
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HJ580_RS18445 (HJ580_18475) - 4167825..4168370 (+) 546 WP_102802433.1 gamma carbonic anhydrase family protein -
  HJ580_RS18450 (HJ580_18480) - 4168410..4168682 (-) 273 WP_102802434.1 DUF1488 domain-containing protein -
  HJ580_RS18455 (HJ580_18485) aroE 4168679..4169506 (-) 828 WP_102802435.1 shikimate dehydrogenase -
  HJ580_RS18460 (HJ580_18490) tsaC 4169525..4170094 (-) 570 WP_199770306.1 L-threonylcarbamoyladenylate synthase type 1 TsaC -
  HJ580_RS18465 (HJ580_18495) - 4170087..4170638 (-) 552 WP_023640863.1 type I DNA topoisomerase -
  HJ580_RS18470 (HJ580_18500) - 4170658..4171131 (-) 474 WP_012886329.1 DUF494 family protein -
  HJ580_RS18475 (HJ580_18505) dprA 4171103..4172236 (-) 1134 WP_102802437.1 DNA-protecting protein DprA Machinery gene
  HJ580_RS18480 (HJ580_18510) def 4172349..4172858 (+) 510 WP_012886331.1 peptide deformylase -
  HJ580_RS18485 (HJ580_18515) fmt 4172896..4173837 (+) 942 WP_102802438.1 methionyl-tRNA formyltransferase -
  HJ580_RS18490 (HJ580_18520) rsmB 4173923..4175218 (+) 1296 WP_102802439.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -
  HJ580_RS18495 (HJ580_18525) trkA 4175260..4176636 (+) 1377 WP_019845206.1 Trk system potassium transporter TrkA -
  HJ580_RS18500 (HJ580_18530) mscL 4176742..4177167 (+) 426 WP_012768125.1 large-conductance mechanosensitive channel protein MscL -

Sequence

Protein


Download         Length: 377 a.a.        Molecular weight: 40709.56 Da        Isoelectric Point: 6.1730

>NTDB_id=442099 HJ580_RS18475 WP_102802437.1 4171103..4172236(-) (dprA) [Dickeya zeae strain MS_2014]
MMDTEIWLRLASVKGLGAKRCALVFSQLQAENSYSAEHLKALGLTQNQTEQFFGLSDLDVQNTIGWLEKPAHHLVTFGSA
NYPPLLSNIASPPACLYVIGELNLLSSPQIAVVGSRNNSAYGEQWGHFFSEQLSQNRLTVTSGLAVGIDGIAHRAALQAE
GKTLAVLGSGLRRLYPRRHVALADGIVAQGGALVSEFPLNTPPLPVNFPRRNRIISGLSLGVLVVEASLRSGSLVTARYA
LEQNREVFALPGPIGNPMTEGNHWLIQQGATLVTQPQDIFEQLHNGLRWFADIPNEGVPEIICATEGELELPFADVLATV
GDEVTPVDVVAERAGQPVPEVVTKLLDLELAGWIAAVPGGYVRIRRAGHVRRTHVLV

Nucleotide


Download         Length: 1134 bp        

>NTDB_id=442099 HJ580_RS18475 WP_102802437.1 4171103..4172236(-) (dprA) [Dickeya zeae strain MS_2014]
ATGATGGATACGGAAATCTGGTTGCGTCTGGCGTCGGTTAAGGGGCTTGGCGCCAAACGCTGTGCGCTAGTGTTCAGCCA
ATTGCAGGCCGAGAATTCGTATTCGGCCGAACATCTGAAAGCGTTAGGTTTGACGCAAAATCAGACCGAGCAATTTTTCG
GCCTGAGCGACTTGGATGTACAGAATACCATCGGCTGGTTGGAAAAGCCGGCCCATCACCTGGTGACATTTGGCAGCGCC
AATTATCCTCCACTGCTCAGTAACATTGCTTCTCCCCCGGCATGTTTGTATGTCATTGGAGAGCTAAACCTCCTGTCATC
TCCGCAAATCGCGGTGGTGGGTAGCCGTAACAATAGTGCTTATGGCGAACAGTGGGGACATTTCTTTAGCGAACAACTCA
GCCAAAATCGTTTGACAGTAACCAGTGGGCTGGCCGTCGGTATTGATGGGATTGCCCATCGTGCCGCGTTACAGGCAGAA
GGAAAAACCCTTGCCGTCTTAGGAAGTGGATTACGTCGACTTTACCCCCGCCGACATGTGGCGTTAGCGGATGGCATCGT
GGCGCAGGGCGGTGCTCTGGTGTCGGAGTTCCCGCTAAATACACCGCCGCTGCCGGTAAACTTTCCTCGCCGTAATCGCA
TCATCAGTGGATTAAGTCTGGGGGTTCTGGTCGTAGAGGCGTCACTGCGTAGTGGATCGCTGGTGACGGCGCGTTATGCA
TTGGAACAGAATCGTGAGGTTTTTGCCTTGCCTGGTCCGATCGGCAATCCGATGACGGAGGGTAACCACTGGCTGATACA
ACAAGGCGCAACTTTGGTTACTCAGCCTCAGGACATTTTTGAACAACTCCATAATGGGCTGCGTTGGTTTGCCGATATTC
CCAATGAGGGCGTTCCTGAAATTATTTGTGCGACGGAAGGTGAACTGGAATTGCCATTTGCTGATGTGTTGGCTACCGTA
GGAGATGAGGTTACACCTGTTGACGTTGTCGCTGAACGTGCCGGCCAACCTGTGCCAGAGGTGGTGACTAAGTTACTGGA
TCTGGAGTTAGCAGGGTGGATCGCAGCTGTACCCGGCGGCTATGTCCGTATAAGGAGGGCAGGCCATGTTCGACGTACTC
ATGTACTTGTTTGA

Domains

Predicted by InterproScan.

DprA winged helix domain (DprA_WH)

(309-360)

DNA recombination-mediator protein A (DNA_processg_A)

(67-274)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio campbellii strain DS40M4

49.457

97.613

0.483
  dprA Vibrio cholerae strain A1552

45.946

98.143

0.451
  dprA Glaesserella parasuis strain SC1401

42.896

97.082

0.416
  dprA Neisseria meningitidis strain C311

36.48

100

0.379
  dprA Neisseria meningitidis MC58

36.48

100

0.379
  dprA Legionella pneumophila strain ERS1305867

44.918

80.902

0.363