Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   J417_RS19085 Genome accession   NZ_CP053012
Coordinates   4283278..4284411 (-) Length   377 a.a.
NCBI ID   WP_019845209.1    Uniprot ID   -
Organism   Dickeya zeae MS1     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 4278278..4289411
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J417_RS19055 (J417_19085) - 4280018..4280563 (+) 546 WP_016943901.1 gamma carbonic anhydrase family protein -
  J417_RS19060 (J417_19090) - 4280585..4280857 (-) 273 WP_019845212.1 DUF1488 domain-containing protein -
  J417_RS19065 (J417_19095) aroE 4280854..4281681 (-) 828 WP_019845211.1 shikimate dehydrogenase -
  J417_RS19070 (J417_19100) tsaC 4281700..4282269 (-) 570 WP_152426569.1 L-threonylcarbamoyladenylate synthase type 1 TsaC -
  J417_RS19075 (J417_19105) - 4282262..4282813 (-) 552 WP_016943905.1 type I DNA topoisomerase -
  J417_RS19080 (J417_19110) - 4282833..4283306 (-) 474 WP_012886329.1 DUF494 family protein -
  J417_RS19085 (J417_19115) dprA 4283278..4284411 (-) 1134 WP_019845209.1 DNA-protecting protein DprA Machinery gene
  J417_RS19090 (J417_19120) def 4284524..4285033 (+) 510 WP_012886331.1 peptide deformylase -
  J417_RS19095 (J417_19125) fmt 4285071..4286012 (+) 942 WP_019845208.1 methionyl-tRNA formyltransferase -
  J417_RS19100 (J417_19130) rsmB 4286071..4287366 (+) 1296 WP_019845207.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -
  J417_RS19105 (J417_19135) trkA 4287409..4288785 (+) 1377 WP_019845206.1 Trk system potassium transporter TrkA -
  J417_RS19110 (J417_19140) mscL 4288891..4289316 (+) 426 WP_019845205.1 large-conductance mechanosensitive channel protein MscL -

Sequence

Protein


Download         Length: 377 a.a.        Molecular weight: 40783.69 Da        Isoelectric Point: 6.1730

>NTDB_id=442079 J417_RS19085 WP_019845209.1 4283278..4284411(-) (dprA) [Dickeya zeae MS1]
MMDTEIWLRLASVKGLGAKRCALVFSQLQAENSYLAEHLKALGLTQNQTEQFFGLSDLDVQNTIGWLEKPAHHLVTFGSA
NYPPLLSNIASPPACLYVIGELNFLSSPQIAVVGSRNNSAYGEQWGHFFSEQLSQNRLTVTSGLAVGIDGIAHRAALQAE
GKTLAVLGSGLRRLYPRRHVALADAIVAQGGALVSEFPLNTPPLPVNFPRRNRIISGLSLGVLVVEASLRSGSLVTARYA
LEQNREVFALPGPIGNPMTEGNHWLIQQGATLVTQPQDIFEQLHNGLRWFADIPNEGVPEIICATEGELELPFADVLATV
GDEVTPVDVVAERAGQPVPEVVTKLLDLELAGWIAAVPGGYVRIRRAGHVRRTHVLV

Nucleotide


Download         Length: 1134 bp        

>NTDB_id=442079 J417_RS19085 WP_019845209.1 4283278..4284411(-) (dprA) [Dickeya zeae MS1]
ATGATGGATACGGAAATCTGGTTGCGTCTGGCGTCGGTTAAGGGGCTTGGAGCCAAACGCTGTGCGCTAGTGTTCAGCCA
ATTGCAGGCCGAGAATTCGTATTTGGCCGAACATCTGAAAGCGTTAGGTTTGACGCAAAATCAGACCGAGCAATTTTTCG
GCCTGAGCGACTTGGATGTACAGAATACCATCGGCTGGTTGGAAAAGCCGGCCCATCACCTGGTGACATTTGGCAGCGCC
AATTATCCTCCACTGCTCAGTAACATTGCTTCTCCCCCGGCATGTTTGTATGTCATTGGAGAGCTAAACTTCCTGTCATC
TCCGCAAATCGCGGTGGTGGGTAGCCGTAACAATAGTGCTTATGGCGAACAGTGGGGACATTTCTTTAGCGAACAACTCA
GCCAAAATCGTTTGACAGTAACCAGTGGGCTGGCCGTCGGTATTGATGGGATTGCCCATCGAGCCGCTTTACAGGCAGAA
GGAAAAACCCTTGCCGTCTTAGGAAGTGGATTACGTCGACTTTACCCCCGCCGACATGTGGCGTTAGCGGATGCCATCGT
GGCGCAGGGCGGTGCTCTGGTGTCGGAGTTCCCGCTAAATACACCGCCGCTGCCGGTAAACTTTCCTCGCCGTAATCGCA
TCATCAGTGGATTAAGTCTGGGGGTTCTGGTCGTAGAGGCGTCACTGCGTAGTGGATCGCTGGTGACGGCGCGTTATGCA
TTGGAACAGAATCGTGAGGTTTTTGCCTTGCCTGGTCCGATCGGCAATCCGATGACGGAGGGTAACCACTGGCTGATACA
ACAAGGCGCAACTTTGGTTACTCAGCCTCAGGACATTTTTGAACAACTCCATAATGGGCTGCGTTGGTTTGCCGATATTC
CCAATGAGGGCGTTCCTGAAATTATTTGTGCGACGGAAGGTGAACTGGAATTGCCATTTGCTGATGTGTTGGCTACCGTA
GGAGATGAGGTTACACCTGTTGACGTTGTCGCTGAACGTGCCGGCCAACCTGTGCCAGAGGTGGTGACTAAGTTACTGGA
TCTGGAGTTAGCAGGGTGGATCGCAGCTGTACCCGGCGGCTATGTCCGTATAAGGAGGGCAGGCCATGTTCGACGTACTC
ATGTACTTGTTTGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(67-274)

DprA winged helix domain (DprA_WH)

(309-360)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio campbellii strain DS40M4

49.185

97.613

0.48
  dprA Vibrio cholerae strain A1552

45.946

98.143

0.451
  dprA Glaesserella parasuis strain SC1401

42.896

97.082

0.416
  dprA Neisseria meningitidis strain C311

36.829

100

0.382
  dprA Neisseria meningitidis MC58

36.829

100

0.382
  dprA Legionella pneumophila strain ERS1305867

44.918

80.902

0.363