Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   HKK54_RS11540 Genome accession   NZ_CP052860
Coordinates   2495822..2497318 (-) Length   498 a.a.
NCBI ID   WP_169386843.1    Uniprot ID   -
Organism   Pseudomonas sp. ADAK13     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2490822..2502318
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HKK54_RS11520 (HKK54_11520) - 2491042..2491962 (+) 921 WP_010168147.1 LysR substrate-binding domain-containing protein -
  HKK54_RS11525 (HKK54_11525) - 2492140..2494116 (+) 1977 WP_169386841.1 methyl-accepting chemotaxis protein -
  HKK54_RS11530 (HKK54_11530) - 2494235..2495158 (-) 924 WP_178120977.1 ABC transporter six-transmembrane domain-containing protein -
  HKK54_RS11535 (HKK54_11535) - 2495251..2495835 (+) 585 WP_169386842.1 TetR family transcriptional regulator C-terminal domain-containing protein -
  HKK54_RS11540 (HKK54_11540) comM 2495822..2497318 (-) 1497 WP_169386843.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  HKK54_RS11545 (HKK54_11545) - 2497416..2498324 (-) 909 WP_010168138.1 LysR family transcriptional regulator -
  HKK54_RS11550 (HKK54_11550) cfa 2498559..2499671 (+) 1113 WP_081480055.1 cyclopropane fatty acyl phospholipid synthase -
  HKK54_RS11555 (HKK54_11555) - 2499724..2499984 (-) 261 WP_010168136.1 accessory factor UbiK family protein -
  HKK54_RS11560 (HKK54_11560) glnK 2500407..2500745 (+) 339 WP_002555808.1 P-II family nitrogen regulator -
  HKK54_RS11565 (HKK54_11565) - 2500780..2502120 (+) 1341 WP_008439352.1 ammonium transporter -

Sequence

Protein


Download         Length: 498 a.a.        Molecular weight: 53234.45 Da        Isoelectric Point: 8.4270

>NTDB_id=441863 HKK54_RS11540 WP_169386843.1 2495822..2497318(-) (comM) [Pseudomonas sp. ADAK13]
MSLAIVHSRAQIGVEAPAVTVEVHMANGLPSLTLVGLPETAVKESKDRVRSAILNSALQYPSRRITLNLAPADLPKDGGR
FDLAIALGILAASVQVPTLTLDNVECLGELALSGEVRAVKGVLPAALAARKAGRTLIVPRANAEEACLASGLKVIAVDHL
LQVVTHLNGHVPIEPFVSSGLMYLNKPYPDLSEVQGQLAAKRALLIAAAGAHNLLLSGPPGTGKTLLASRLPGLLPPLSE
QEALEVAAIQSVISLAPLSHWPHRPFRQPHHSASGPALVGGGSKPQPGEITLAHHGVLFLDELPEFDRKVLEVLREPLES
GHIVISRARDRVSFPARFQLVAAMNPCPCGYVGEPSGRCRCTPEQIQRYRNKLSGPLLDRIDLHVTVARESTALNPGTQS
GDDTASASVLVAEARERQQRRQGCANAFLDLPGLRQHCKLKKADEGWLESACERLTLSLRAAHRLLKVARTLADLEQVEA
IARHHLAEALQYRPASAS

Nucleotide


Download         Length: 1497 bp        

>NTDB_id=441863 HKK54_RS11540 WP_169386843.1 2495822..2497318(-) (comM) [Pseudomonas sp. ADAK13]
ATGTCCCTCGCCATCGTCCACAGCCGCGCCCAGATTGGCGTTGAAGCCCCCGCCGTCACTGTCGAGGTGCACATGGCCAA
CGGCTTGCCATCGCTGACGCTGGTGGGCCTGCCGGAAACCGCGGTCAAGGAAAGCAAGGACCGCGTGCGCAGCGCCATTC
TCAATTCTGCGCTGCAATACCCGTCCCGCCGCATCACCCTCAACCTCGCGCCCGCCGACCTGCCCAAGGACGGCGGGCGT
TTTGATTTGGCGATTGCCCTGGGGATTCTCGCCGCCAGCGTGCAGGTGCCGACATTGACCCTCGATAACGTGGAATGCCT
GGGCGAGCTGGCGCTGTCCGGCGAGGTGCGTGCGGTGAAAGGTGTGTTGCCGGCAGCCCTGGCGGCGCGCAAGGCCGGGC
GCACCTTGATCGTGCCCCGGGCCAATGCCGAGGAAGCCTGCCTTGCCTCGGGGTTGAAGGTGATTGCCGTGGACCATCTG
CTGCAAGTGGTAACGCACTTGAACGGTCACGTGCCGATCGAGCCCTTTGTTTCCAGTGGCCTGATGTATTTGAACAAACC
CTACCCCGACCTGAGTGAAGTGCAGGGCCAACTGGCGGCCAAGCGTGCGCTGTTGATCGCTGCGGCGGGCGCCCACAACC
TGTTGCTCAGCGGGCCGCCGGGCACCGGCAAGACCTTGCTCGCCAGCCGTCTGCCGGGGTTGTTGCCACCCTTGAGCGAA
CAGGAAGCGCTGGAGGTGGCGGCGATTCAGTCGGTGATCAGCCTGGCGCCGCTGAGCCATTGGCCGCACCGGCCGTTTCG
TCAGCCGCACCATTCGGCATCCGGCCCTGCGCTGGTGGGCGGTGGTTCGAAACCGCAGCCGGGGGAAATCACCCTTGCCC
ATCACGGCGTGCTGTTTCTTGATGAGCTGCCGGAGTTTGATCGCAAGGTTTTGGAAGTGCTGCGTGAACCACTGGAATCC
GGGCATATCGTGATTTCCCGCGCCCGCGACCGGGTGAGTTTCCCGGCGCGCTTTCAGTTGGTAGCGGCGATGAACCCCTG
CCCTTGCGGCTACGTGGGCGAGCCGAGCGGGCGCTGCCGCTGCACGCCGGAGCAGATCCAGCGCTATCGCAACAAACTCT
CGGGGCCGCTGCTGGACCGGATTGACTTGCACGTGACCGTCGCCCGGGAAAGCACCGCGCTGAACCCGGGCACACAGTCC
GGTGATGACACCGCCAGCGCGTCCGTGCTCGTCGCCGAGGCCCGGGAGCGCCAGCAACGGCGCCAGGGCTGCGCCAACGC
CTTTCTCGACCTGCCGGGGCTACGCCAGCACTGCAAACTGAAAAAGGCTGATGAAGGCTGGCTGGAGAGCGCGTGCGAAC
GGCTGACGCTGTCGCTGCGGGCGGCTCATCGCTTGCTCAAGGTTGCCCGTACCCTCGCCGACCTCGAACAGGTGGAGGCC
ATCGCCCGTCATCATCTGGCAGAAGCCTTGCAATACCGGCCCGCTAGCGCGTCTTAG

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-391)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(404-493)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

56.97

99.398

0.566
  comM Glaesserella parasuis strain SC1401

55.489

100

0.558
  comM Vibrio campbellii strain DS40M4

55.96

99.398

0.556
  comM Haemophilus influenzae Rd KW20

54.491

100

0.548
  comM Legionella pneumophila str. Paris

51.613

99.598

0.514
  comM Legionella pneumophila strain ERS1305867

51.613

99.598

0.514
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.123

100

0.466