Detailed information    

insolico Bioinformatically predicted

Overview


Name   vraS   Type   Regulator
Locus tag   SAMSHR1132_RS09210 Genome accession   NC_016941
Coordinates   1913335..1914378 (-) Length   347 a.a.
NCBI ID   WP_001017132.1    Uniprot ID   -
Organism   Staphylococcus argenteus     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context


Location: 1908335..1919378
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SAMSHR1132_RS09180 (SAMSHR1132_17240) - 1908746..1909993 (-) 1248 WP_000656301.1 aminopeptidase -
  SAMSHR1132_RS09185 (SAMSHR1132_17250) - 1910005..1910205 (-) 201 WP_000180459.1 DUF1128 family protein -
  SAMSHR1132_RS09190 (SAMSHR1132_17260) - 1910352..1910816 (+) 465 WP_000228669.1 low molecular weight protein-tyrosine-phosphatase -
  SAMSHR1132_RS09195 (SAMSHR1132_17270) - 1910823..1911098 (+) 276 WP_000428174.1 YtxH domain-containing protein -
  SAMSHR1132_RS09200 (SAMSHR1132_17280) - 1911377..1912600 (+) 1224 WP_000037065.1 YihY/virulence factor BrkB family protein -
  SAMSHR1132_RS09205 (SAMSHR1132_17290) vraR 1912716..1913345 (-) 630 WP_000153529.1 two-component system response regulator VraR Regulator
  SAMSHR1132_RS09210 (SAMSHR1132_17300) vraS 1913335..1914378 (-) 1044 WP_001017132.1 sensor histidine kinase Regulator
  SAMSHR1132_RS09215 (SAMSHR1132_17310) liaF 1914375..1915076 (-) 702 WP_000149061.1 cell wall-active antibiotics response protein LiaF -
  SAMSHR1132_RS09220 (SAMSHR1132_17320) - 1915091..1915477 (-) 387 WP_001110170.1 hypothetical protein -
  SAMSHR1132_RS09225 (SAMSHR1132_17330) map 1915701..1916456 (-) 756 WP_000636139.1 type I methionyl aminopeptidase -
  SAMSHR1132_RS09235 (SAMSHR1132_17340) - 1916987..1917973 (+) 987 WP_001005533.1 aromatic acid exporter family protein -
  SAMSHR1132_RS09240 (SAMSHR1132_17350) - 1918606..1919328 (-) 723 WP_000544963.1 type 1 glutamine amidotransferase -

Sequence


Protein


Download         Length: 347 a.a.        Molecular weight: 40020.54 Da        Isoelectric Point: 5.8951

>NTDB_id=44171 SAMSHR1132_RS09210 WP_001017132.1 1913335..1914378(-) (vraS) [Staphylococcus argenteus]
MNHYIRTIGSMLILVYSMLAAFLFIDKVFVNIIYFQGMFYTQIFGIPVFLFLNLIIILLCIIVGSVLAYKINQQNDWIKT
QIERSMEGETVGINDQNIEIYSETLDLYHTLVPLNQELHKLRLKTQNLTNENYNINDVKVKKIIEDERQRLARELHDSVS
QQLFAASMMLSAIKETKLEPPLDQQIPILEKMVQDSQLEMRALLLHLRPLGLKDKSLGEGIKDLVIDLQKKVPMKVVHEI
QDFKVPKGIEDHLFRITQEAISNTLRHSNGTKVTVELFNKDDYLLLRIQDNGKGFNVDEKLEQSYGLKNMRERALEIGAT
FLIVSLPDSGTRIEVKAPLNKEDSYDD

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=44171 SAMSHR1132_RS09210 WP_001017132.1 1913335..1914378(-) (vraS) [Staphylococcus argenteus]
ATGAACCATTATATTAGAACAATTGGTTCGATGCTCATCTTAGTATACAGCATGCTAGCGGCATTTCTTTTTATAGATAA
AGTTTTCGTTAATATTATTTATTTTCAAGGCATGTTTTATACACAAATATTTGGGATTCCAGTCTTTTTATTTTTAAATC
TCATTATCATTTTATTGTGTATCATCGTTGGATCGGTGCTTGCCTACAAAATTAATCAACAAAATGATTGGATTAAGACG
CAAATTGAGCGTTCTATGGAAGGCGAAACAGTAGGTATCAACGATCAAAATATAGAAATATATAGTGAAACATTGGATTT
ATATCATACGTTAGTACCTTTAAATCAAGAATTGCATAAGTTAAGACTCAAAACGCAAAATTTAACAAATGAAAATTACA
ATATTAATGATGTTAAAGTTAAAAAGATTATCGAAGATGAAAGACAACGTTTAGCTAGAGAACTACACGACTCTGTTAGT
CAACAACTTTTTGCGGCAAGTATGATGTTATCTGCAATTAAAGAAACAAAATTAGAACCACCTTTAGATCAACAAATACC
TATTTTAGAGAAAATGGTTCAAGATTCTCAGTTAGAAATGCGTGCTCTGCTGCTACACTTAAGACCACTCGGCTTGAAAG
ACAAGTCGTTAGGCGAAGGTATTAAAGATTTAGTTATTGATTTACAAAAGAAAGTGCCAATGAAAGTTGTGCATGAAATA
CAAGATTTTAAAGTGCCAAAAGGTATTGAGGATCATTTATTTAGAATTACGCAAGAAGCAATATCTAATACATTGAGACA
TTCAAATGGTACGAAAGTAACTGTAGAATTATTTAATAAAGATGATTATTTATTGTTAAGGATACAAGATAATGGTAAAG
GTTTTAATGTAGATGAAAAATTAGAACAAAGTTATGGACTTAAAAATATGCGTGAAAGAGCTTTGGAAATTGGTGCAACG
TTCCTTATTGTATCACTACCAGATTCAGGTACACGTATTGAGGTGAAAGCACCTCTAAATAAGGAGGATTCGTATGACGA
TTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraS Staphylococcus aureus N315

99.712

100

0.997


Multiple sequence alignment