Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   CA267_RS08880 Genome accession   NZ_CP052766
Coordinates   1995298..1996815 (+) Length   505 a.a.
NCBI ID   WP_075607813.1    Uniprot ID   A0A6M4MFE4
Organism   Alteromonas pelagimontana strain 5.12     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1990298..2001815
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CA267_RS08865 (CA267_008875) ilvD 1991398..1993248 (-) 1851 WP_075607816.1 dihydroxy-acid dehydratase -
  CA267_RS08870 (CA267_008880) - 1993268..1994200 (-) 933 WP_075607815.1 branched-chain amino acid transaminase -
  CA267_RS08875 (CA267_008885) - 1994617..1995228 (+) 612 WP_075607814.1 trimeric intracellular cation channel family protein -
  CA267_RS08880 (CA267_008890) comM 1995298..1996815 (+) 1518 WP_075607813.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  CA267_RS08885 (CA267_008895) ilvY 1996797..1997660 (-) 864 WP_075607812.1 HTH-type transcriptional activator IlvY -
  CA267_RS08890 (CA267_008900) ilvC 1997814..1999295 (+) 1482 WP_075607811.1 ketol-acid reductoisomerase -
  CA267_RS08895 (CA267_008905) - 1999982..2000314 (+) 333 WP_075607810.1 hypothetical protein -
  CA267_RS08900 (CA267_008910) - 2000328..2001572 (-) 1245 WP_075609923.1 multidrug effflux MFS transporter -

Sequence

Protein


Download         Length: 505 a.a.        Molecular weight: 54230.01 Da        Isoelectric Point: 7.4373

>NTDB_id=441542 CA267_RS08880 WP_075607813.1 1995298..1996815(+) (comM) [Alteromonas pelagimontana strain 5.12]
MGLSVVLTRAGEGIDAPQVKVEVHLANGLPAFHLVGMAQTSVKEARDRVRSALINSGFEFPARRITVNLAPATIPKQGGR
YDLPIAIGVLVAAGVIPAQSVINTEFIGELGLNGEIKAVRGILPVLLSATSAGHTLFHPTENEQEAALVDDAERFAAPSL
LTVFQHLIGQQKLPQGMANSPDTCCQKSPRWDDIIGQGQAKRALVIAAAGSHNILFVGPPGTGKSLLASRLLSLMPPLRT
AEALEVASIHSVKGESVSANSLHQRPFRSPHHTSSAIALTGGGATPQPGEVSLAHHGVLFLDEFPEFGRKALDVLREPLE
TGDIHISRASGQARYPAKFQLIAAMNPSPTGDIADGRCSPDKILRYLNSVSGPLLDRIDLQVDVPRLPDYFLQQTPEATA
QDSAVEAYMQIQQARQQQLARQNCLNAHVAVGQLAAICQLAEADMQFLQHASSRLKLSMRTFHRTLKVARTIADLEQAEH
VTRAHLAEALGYRALDKIINQFSSN

Nucleotide


Download         Length: 1518 bp        

>NTDB_id=441542 CA267_RS08880 WP_075607813.1 1995298..1996815(+) (comM) [Alteromonas pelagimontana strain 5.12]
ATGGGACTGTCGGTGGTACTTACTCGCGCCGGAGAAGGCATTGATGCACCCCAGGTAAAAGTGGAGGTACATCTGGCTAA
CGGTTTACCGGCTTTTCATCTGGTGGGCATGGCACAAACCAGCGTTAAAGAAGCCAGAGACCGTGTGCGTAGCGCCTTGA
TTAACAGCGGTTTTGAATTCCCTGCGCGCCGGATTACGGTTAATCTTGCCCCGGCAACCATTCCCAAGCAAGGTGGCCGC
TACGATTTACCTATTGCAATTGGAGTGTTGGTAGCAGCTGGAGTTATTCCCGCTCAATCTGTTATTAATACCGAATTCAT
CGGCGAATTAGGCCTAAACGGAGAAATTAAAGCAGTGCGAGGAATACTGCCAGTATTACTAAGTGCAACCTCCGCTGGAC
ATACGCTTTTTCACCCTACTGAAAACGAGCAGGAAGCGGCGTTAGTAGACGATGCAGAACGTTTTGCTGCACCGTCTCTT
CTTACCGTTTTTCAACATCTCATTGGTCAACAGAAATTACCTCAAGGTATGGCTAACTCGCCGGATACCTGCTGTCAGAA
AAGCCCGAGATGGGATGATATTATCGGTCAAGGGCAGGCTAAGCGTGCTTTGGTGATTGCCGCGGCTGGAAGTCACAACA
TTCTATTCGTGGGGCCGCCAGGTACAGGAAAAAGTTTGTTAGCCAGCCGTTTACTGTCGCTAATGCCGCCATTACGAACT
GCTGAGGCTCTGGAGGTTGCTTCTATTCATTCGGTGAAAGGAGAAAGCGTGAGTGCGAATTCGCTGCACCAGCGGCCCTT
TCGTTCTCCTCACCATACCAGCTCAGCCATAGCCTTGACGGGCGGCGGCGCTACGCCGCAACCGGGCGAAGTGTCCCTGG
CCCATCACGGCGTATTGTTTCTGGACGAGTTTCCGGAGTTCGGACGCAAAGCACTGGACGTATTACGCGAGCCACTGGAG
ACAGGAGACATTCATATTTCTCGTGCTTCCGGGCAGGCACGTTACCCAGCAAAATTTCAGTTAATCGCCGCCATGAACCC
TAGCCCCACCGGAGATATTGCAGATGGTCGCTGTTCACCAGATAAAATTCTTCGCTATTTAAACAGTGTCTCCGGGCCAC
TACTCGACAGAATAGATTTACAAGTGGATGTGCCAAGGCTGCCTGATTATTTTCTTCAGCAAACGCCAGAAGCCACGGCA
CAGGATAGCGCCGTAGAAGCTTATATGCAGATTCAACAGGCCAGACAGCAGCAACTTGCCAGACAAAATTGCCTCAATGC
TCATGTGGCGGTGGGTCAGTTGGCGGCAATCTGCCAGTTGGCAGAGGCTGATATGCAGTTTCTCCAACACGCTTCTTCCC
GGCTTAAACTTTCCATGCGCACCTTTCACCGCACTCTAAAGGTAGCTCGCACTATCGCCGATTTGGAGCAAGCCGAGCAC
GTCACTCGCGCTCATCTGGCTGAAGCTTTGGGTTATCGGGCGCTGGATAAAATTATCAATCAATTTAGCTCCAATTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(192-387)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(409-493)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6M4MFE4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

52.165

100

0.525
  comM Vibrio campbellii strain DS40M4

50.394

100

0.507
  comM Haemophilus influenzae Rd KW20

48.627

100

0.491
  comM Glaesserella parasuis strain SC1401

47.929

100

0.481
  comM Legionella pneumophila str. Paris

47.39

98.614

0.467
  comM Legionella pneumophila strain ERS1305867

47.39

98.614

0.467
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

41.257

100

0.416