Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   SAMSHR1132_RS05720 Genome accession   NC_016941
Coordinates   1213921..1214793 (+) Length   290 a.a.
NCBI ID   WP_000620186.1    Uniprot ID   -
Organism   Staphylococcus argenteus     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1208921..1219793
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SAMSHR1132_RS05700 (SAMSHR1132_10880) sucC 1209034..1210200 (+) 1167 WP_001020805.1 ADP-forming succinate--CoA ligase subunit beta -
  SAMSHR1132_RS05705 (SAMSHR1132_10890) sucD 1210222..1211130 (+) 909 WP_000110253.1 succinate--CoA ligase subunit alpha -
  SAMSHR1132_RS05710 (SAMSHR1132_10900) - 1211358..1212476 (+) 1119 WP_001041670.1 LysM peptidoglycan-binding domain-containing protein -
  SAMSHR1132_RS05715 (SAMSHR1132_10910) fmhC 1212504..1213748 (+) 1245 WP_000672873.1 FemA/FemB family glycyltransferase FmhC -
  SAMSHR1132_RS05720 (SAMSHR1132_10920) dprA 1213921..1214793 (+) 873 WP_000620186.1 DNA-processing protein DprA Machinery gene
  SAMSHR1132_RS05725 (SAMSHR1132_10930) topA 1214967..1217042 (+) 2076 WP_014373823.1 type I DNA topoisomerase -
  SAMSHR1132_RS05730 (SAMSHR1132_10940) trmFO 1217198..1218505 (+) 1308 WP_000195261.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -

Sequence

Protein


Download         Length: 290 a.a.        Molecular weight: 33500.95 Da        Isoelectric Point: 9.6076

>NTDB_id=44150 SAMSHR1132_RS05720 WP_000620186.1 1213921..1214793(+) (dprA) [Staphylococcus argenteus]
MIRLFLLKLYWAHFSTKQIHQLLMAYPNVIKEGGRKKDTYLCEWVNREENVHLLRKYYAFIKLDHNDIIKELQKLKVSYI
TYMDSEYPVLLKEIYQFPLLLFYKGNIKLINNMHHLAVVGARDSTSYTQQSLEFLLSNDKSKYLTIVSGLAQGADAMAHQ
IALKYNLPTIAVLAFGHQTHYPKSTLALRNKIEEKGLVISEYPPHTPIAKYRFPERNRIISGLSKGVLITEAKEQSGSHI
TIDFALEQNRNVYVLPGSMFNPMTKGNLLRIQEGAKVVLNANDIFEDYYI

Nucleotide


Download         Length: 873 bp        

>NTDB_id=44150 SAMSHR1132_RS05720 WP_000620186.1 1213921..1214793(+) (dprA) [Staphylococcus argenteus]
TTGATTAGACTATTTTTGCTTAAGTTATACTGGGCACACTTTTCGACTAAACAAATTCATCAATTATTAATGGCATATCC
TAATGTAATTAAAGAGGGGGGTAGAAAAAAAGATACTTATTTATGTGAATGGGTAAATAGGGAAGAAAATGTTCATTTAT
TACGTAAATACTATGCTTTTATAAAACTTGATCATAACGATATTATTAAAGAACTGCAGAAATTAAAAGTAAGTTACATT
ACATATATGGATTCTGAATACCCAGTGCTATTAAAAGAAATATATCAATTTCCATTACTTCTTTTCTATAAAGGGAACAT
CAAATTAATAAATAATATGCATCATTTGGCAGTAGTAGGTGCAAGAGATTCTACAAGTTATACCCAACAGTCTTTAGAAT
TTTTATTATCAAATGATAAAAGCAAATATTTAACAATTGTTTCCGGCCTTGCTCAAGGAGCTGATGCAATGGCACATCAA
ATAGCTTTAAAATACAATCTCCCTACAATAGCAGTTTTAGCCTTTGGCCATCAAACACATTATCCCAAAAGTACATTAGC
ATTAAGAAATAAAATAGAAGAAAAAGGTTTAGTTATATCCGAATATCCACCACATACACCAATTGCTAAATATAGATTTC
CTGAGCGCAATAGAATTATCAGCGGTTTGTCAAAAGGGGTTTTAATTACTGAGGCTAAGGAACAAAGTGGCAGTCACATC
ACGATAGATTTTGCATTAGAGCAAAATAGAAATGTTTATGTTTTACCTGGATCTATGTTTAATCCTATGACAAAAGGTAA
TTTATTACGTATCCAAGAAGGTGCTAAGGTAGTATTAAACGCTAATGATATATTTGAAGACTACTATATTTAA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(72-279)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Staphylococcus aureus MW2

98.621

100

0.986
  dprA Staphylococcus aureus N315

98.276

100

0.983
  dprA/cilB/dalA Streptococcus pneumoniae Rx1

37.809

97.586

0.369
  dprA/cilB/dalA Streptococcus pneumoniae TIGR4

37.809

97.586

0.369
  dprA/cilB/dalA Streptococcus pneumoniae D39

37.809

97.586

0.369
  dprA/cilB/dalA Streptococcus pneumoniae R6

37.809

97.586

0.369
  dprA/cilB/dalA Streptococcus mitis SK321

37.456

97.586

0.366

Multiple sequence alignment