Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrB   Type   Machinery gene
Locus tag   H9K48_RS04990 Genome accession   NZ_CP064033
Coordinates   1055818..1057848 (+) Length   676 a.a.
NCBI ID   WP_086585187.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain DLM1805     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1050818..1062848
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H9K48_RS04970 (H9K48_04965) rsxC 1051145..1053640 (-) 2496 WP_025793084.1 electron transport complex subunit RsxC -
  H9K48_RS04975 (H9K48_04970) rsxB 1053649..1054245 (-) 597 WP_005494493.1 electron transport complex subunit RsxB -
  H9K48_RS04980 (H9K48_04975) rsxA 1054249..1054827 (-) 579 WP_005380762.1 electron transport complex subunit RsxA -
  H9K48_RS04990 (H9K48_04985) uvrB 1055818..1057848 (+) 2031 WP_086585187.1 excinuclease ABC subunit UvrB Machinery gene
  H9K48_RS04995 (H9K48_04990) luxO 1058137..1059540 (+) 1404 WP_005461534.1 quorum-sensing sigma-54 dependent transcriptional regulator LuxO Regulator
  H9K48_RS05000 (H9K48_04995) luxU 1059543..1059881 (+) 339 WP_025793085.1 quorum-sensing phosphorelay protein LuxU -
  H9K48_RS05005 (H9K48_05000) - 1059958..1060851 (-) 894 WP_005494500.1 YvcK family protein -
  H9K48_RS05010 (H9K48_05005) moaA 1061147..1062136 (+) 990 WP_025793087.1 GTP 3',8-cyclase MoaA -
  H9K48_RS05015 (H9K48_05010) moaB 1062239..1062751 (+) 513 WP_005461494.1 molybdenum cofactor biosynthesis protein B -

Sequence

Protein


Download         Length: 676 a.a.        Molecular weight: 77100.76 Da        Isoelectric Point: 4.8313

>NTDB_id=441224 H9K48_RS04990 WP_086585187.1 1055818..1057848(+) (uvrB) [Vibrio parahaemolyticus strain DLM1805]
MSKVYELVSEYQPSGDQPTAIKQLLEGLDAGLAHQTLLGVTGSGKTFTLANVIAQAQRPAILLAPNKTLAAQLYGEMKSF
FPNNAVEYFVSYYDYYQPEAYVPTTDTFIEKDASVNAHIEQMRLSATKALLERKDAIIVASVSAIYGLGDPESYLQMMLH
LRRGDVIDQRDMLRRLAELQYSRNDVAFERGQFRVRGEVIDIFPAESDQDAVRVEMFDDEVDCISVFDPLTGVVKQRDLP
RYTIYPKTHYVTPRDRILEAIESIKVELEVRKKQLLENNKLIEEQRISQRTQFDIEMMNELGFCSGIENYSRYLSGRSEG
EPPPTLFDYLPHDGLLIIDESHVTVPQIGAMYKGDRSRKETLVEFGFRLPSALDNRPLKFEEFESLAPQTIFVSATPGNY
ELEKSADEIADQVVRPTGLLDPILEVRPVATQVDDLLSEIRIRAAKEERVLVTTLTKRMAEDLTEYLHEHDVRVRYLHSD
IDTVERVEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNIEGKAILYADSITK
SMKKAMDETNRRREKQQAYNEKMGITPQALKRNIKDIMELGDITKSKRQRNTKQVPLSKVAEPSQTYEVMSPQQLEKEIS
RLEAAMYQHAQDLEFELAAEKRDEIEKLRAQFIANS

Nucleotide


Download         Length: 2031 bp        

>NTDB_id=441224 H9K48_RS04990 WP_086585187.1 1055818..1057848(+) (uvrB) [Vibrio parahaemolyticus strain DLM1805]
ATGAGTAAAGTTTATGAACTGGTCTCTGAGTATCAACCGTCAGGTGACCAGCCAACCGCGATTAAGCAATTATTAGAAGG
CTTAGATGCGGGGTTGGCGCATCAGACGCTTTTAGGTGTAACGGGTTCTGGTAAAACGTTCACGCTAGCGAATGTGATTG
CTCAAGCACAGCGTCCTGCAATTTTACTGGCGCCAAATAAAACCCTCGCGGCTCAGTTGTATGGGGAAATGAAATCGTTC
TTTCCTAACAATGCGGTCGAGTATTTTGTGTCTTACTACGACTACTACCAACCAGAAGCGTACGTGCCTACAACTGACAC
CTTTATTGAAAAAGATGCGTCAGTGAACGCTCACATTGAGCAAATGCGTTTGTCTGCCACCAAAGCTTTACTAGAACGAA
AAGACGCCATCATCGTCGCTTCTGTCTCGGCCATTTATGGTTTGGGTGATCCCGAGTCGTATTTACAGATGATGCTGCAC
TTACGCCGTGGTGACGTGATCGATCAGCGTGACATGCTTCGTCGCCTAGCGGAACTCCAATACTCGCGTAATGATGTCGC
TTTTGAACGCGGTCAGTTCCGTGTTCGCGGCGAAGTGATCGACATATTCCCAGCTGAGTCTGACCAAGATGCTGTCCGTG
TTGAAATGTTTGATGATGAAGTGGATTGTATCAGTGTGTTTGATCCATTGACGGGTGTCGTGAAACAAAGAGATTTACCG
CGTTACACGATTTACCCGAAAACGCACTACGTGACGCCCCGCGACCGTATTCTCGAAGCGATAGAAAGCATCAAAGTTGA
GCTCGAAGTACGCAAGAAACAATTACTAGAGAATAACAAGCTAATAGAAGAGCAGCGCATTAGCCAGCGTACACAGTTTG
ATATCGAGATGATGAATGAGCTCGGTTTCTGCTCTGGTATTGAAAACTATTCACGTTATCTCAGTGGTCGTTCTGAGGGC
GAGCCGCCTCCAACCTTGTTCGATTACTTGCCTCATGATGGTTTACTTATCATCGATGAGTCCCACGTGACTGTACCGCA
GATTGGTGCGATGTATAAAGGTGACCGTTCACGTAAAGAAACTCTGGTTGAGTTTGGTTTCCGCTTACCATCGGCGTTGG
ACAACCGTCCTCTAAAATTTGAAGAATTTGAGTCTCTTGCTCCGCAAACTATTTTCGTCTCGGCAACGCCGGGCAATTAT
GAGCTAGAGAAATCGGCAGATGAAATTGCGGATCAAGTCGTGCGTCCTACCGGCTTGCTGGATCCAATACTCGAAGTTCG
ACCAGTCGCGACTCAGGTCGATGATCTATTGTCTGAAATTCGTATTCGTGCCGCCAAAGAGGAACGTGTTCTTGTTACGA
CTCTGACCAAACGAATGGCGGAAGATTTAACGGAATATCTGCATGAACATGATGTTCGTGTTCGATATCTTCACTCCGAC
ATCGACACGGTAGAGCGCGTCGAGATCATTCGAGATTTGCGCTTAGGTGAGTTCGATGTCTTAGTGGGTATCAACTTGCT
TCGAGAAGGTTTGGATATGCCGGAAGTCTCGCTGGTGGCAATTTTGGATGCCGACAAAGAAGGTTTCTTGCGTTCAGAAC
GTTCACTCATTCAGACGATAGGTCGTGCTGCACGAAACATTGAGGGTAAAGCGATTCTCTATGCGGATAGCATTACAAAA
TCGATGAAAAAAGCGATGGATGAAACAAATCGTCGTCGTGAGAAGCAGCAAGCGTACAACGAGAAAATGGGCATTACGCC
GCAAGCGTTAAAACGTAATATCAAGGATATTATGGAATTGGGCGACATTACTAAGTCCAAACGTCAACGCAATACTAAGC
AAGTACCACTGTCTAAAGTGGCTGAACCATCTCAAACTTACGAAGTGATGTCTCCACAACAATTGGAGAAGGAAATCAGT
CGACTAGAAGCGGCGATGTACCAACATGCTCAGGATCTGGAATTCGAGCTTGCGGCTGAGAAGCGTGATGAAATAGAAAA
ACTGCGTGCGCAATTCATCGCGAATAGCTAG

Domains

Predicted by InterProScan.

Type III restriction enzyme, res subunit (ResIII)

(13-129)

UvrB interaction domain (UvrB_inter)

(159-250)

Ultra-violet resistance protein B (UvrB)

(553-594)

Helicase conserved C-terminal domain (Helicase_C)

(440-545)

UvrB/uvrC motif (UVR)

(636-671)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrB Streptococcus pneumoniae TIGR4

55.856

98.521

0.55
  uvrB Streptococcus pneumoniae R6

55.856

98.521

0.55
  uvrB Streptococcus pneumoniae D39

55.856

98.521

0.55