Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilP   Type   Machinery gene
Locus tag   HIN87_RS04635 Genome accession   NZ_CP051869
Coordinates   944106..944633 (-) Length   175 a.a.
NCBI ID   WP_057049054.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain Ab-D10a-a     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 939106..949633
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HIN87_RS04615 (HIN87_04615) - 939295..940170 (-) 876 WP_000218806.1 hypothetical protein -
  HIN87_RS04620 (HIN87_04620) aroB 940186..941268 (-) 1083 WP_001193997.1 3-dehydroquinate synthase -
  HIN87_RS04625 (HIN87_04625) aroK 941297..941866 (-) 570 WP_000643712.1 shikimate kinase AroK -
  HIN87_RS04630 (HIN87_04630) pilQ 941878..944043 (-) 2166 WP_031999626.1 type IV pilus secretin PilQ family protein Machinery gene
  HIN87_RS04635 (HIN87_04635) pilP 944106..944633 (-) 528 WP_057049054.1 pilus assembly protein PilP Machinery gene
  HIN87_RS04640 (HIN87_04640) pilO 944644..945384 (-) 741 WP_031999622.1 type 4a pilus biogenesis protein PilO Machinery gene
  HIN87_RS04645 (HIN87_04645) pilN 945381..946022 (-) 642 WP_169030851.1 PilN domain-containing protein Machinery gene
  HIN87_RS04650 (HIN87_04650) pilM 946022..947080 (-) 1059 WP_002014066.1 pilus assembly protein PilM Machinery gene

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 19449.66 Da        Isoelectric Point: 8.9898

>NTDB_id=441224 HIN87_RS04635 WP_057049054.1 944106..944633(-) (pilP) [Acinetobacter baumannii strain Ab-D10a-a]
MKIKQITLYVLACAVLVGCDSRIDAVNQEMTNIRNQPPLPIEPAPIFTPVPQFNYAAHQLKSPFMPSSLAAELKIMAGKR
VYPNFSRAPQPLESYALEALNMKGSMRNNRGQILALIQTPDQQIERVQVGNYMGMNQGRITHISPTQIDLVEIVPDGREG
YVERPRTLVLIGPAP

Nucleotide


Download         Length: 528 bp        

>NTDB_id=441224 HIN87_RS04635 WP_057049054.1 944106..944633(-) (pilP) [Acinetobacter baumannii strain Ab-D10a-a]
ATGAAAATTAAGCAAATTACTCTTTATGTTTTGGCGTGTGCTGTGCTTGTCGGTTGTGATTCAAGAATTGATGCAGTAAA
TCAGGAAATGACCAATATTCGTAATCAGCCGCCACTCCCTATTGAACCAGCACCGATTTTTACTCCTGTACCACAATTTA
ATTACGCTGCTCATCAATTAAAAAGCCCATTTATGCCAAGTTCTCTAGCTGCCGAGCTCAAGATTATGGCGGGGAAACGG
GTTTATCCGAATTTCTCACGTGCGCCGCAACCACTCGAAAGTTATGCACTTGAAGCTTTAAATATGAAAGGGAGCATGCG
TAATAATCGAGGGCAGATATTGGCCCTGATCCAAACACCGGATCAGCAGATTGAACGGGTACAAGTGGGTAACTATATGG
GTATGAATCAGGGCCGTATTACCCATATTAGTCCAACCCAGATTGATCTGGTTGAAATCGTACCGGATGGTCGAGAAGGC
TATGTCGAAAGACCAAGAACCTTGGTTTTGATTGGGCCTGCACCCTAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(27-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Acinetobacter baumannii D1279779

99.429

100

0.994
  comL Acinetobacter baylyi ADP1

71.264

99.429

0.709