Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   HIN87_RS04645 Genome accession   NZ_CP051869
Coordinates   945381..946022 (-) Length   213 a.a.
NCBI ID   WP_169030851.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain Ab-D10a-a     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 940381..951022
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HIN87_RS04625 (HIN87_04625) aroK 941297..941866 (-) 570 WP_000643712.1 shikimate kinase AroK -
  HIN87_RS04630 (HIN87_04630) pilQ 941878..944043 (-) 2166 WP_031999626.1 type IV pilus secretin PilQ family protein Machinery gene
  HIN87_RS04635 (HIN87_04635) pilP 944106..944633 (-) 528 WP_057049054.1 pilus assembly protein PilP Machinery gene
  HIN87_RS04640 (HIN87_04640) pilO 944644..945384 (-) 741 WP_031999622.1 type 4a pilus biogenesis protein PilO Machinery gene
  HIN87_RS04645 (HIN87_04645) pilN 945381..946022 (-) 642 WP_169030851.1 PilN domain-containing protein Machinery gene
  HIN87_RS04650 (HIN87_04650) pilM 946022..947080 (-) 1059 WP_002014066.1 pilus assembly protein PilM Machinery gene
  HIN87_RS04655 (HIN87_04655) ponA 947242..949797 (+) 2556 WP_031999621.1 penicillin-binding protein PBP1a -
  HIN87_RS04660 (HIN87_04660) - 949815..950639 (-) 825 WP_002019666.1 putative RNA methyltransferase -
  HIN87_RS04665 (HIN87_04665) - 950642..950974 (-) 333 WP_000169603.1 hypothetical protein -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 23975.26 Da        Isoelectric Point: 5.1246

>NTDB_id=441226 HIN87_RS04645 WP_169030851.1 945381..946022(-) (pilN) [Acinetobacter baumannii strain Ab-D10a-a]
MATINLLPWREELREQRKKQFITLCFGVVVLGITTVFGGWFYFDHKLDDQEQANQLIMSTNQNLDQQLKTLNGLQEQRDA
IIERMKLIQGLQSQRPVVVRLVDELVRVTPSAMYLTKFSRTGDKFTIEGKAESPNTVAELLRNLEASPWYRNAFMNSFLA
NEEKKDNAASSLLPRVEDHYGSFVVTVDLGEMGVATTDDSAKPSTGESVGAAK

Nucleotide


Download         Length: 642 bp        

>NTDB_id=441226 HIN87_RS04645 WP_169030851.1 945381..946022(-) (pilN) [Acinetobacter baumannii strain Ab-D10a-a]
ATGGCAACAATTAATTTACTGCCTTGGCGCGAAGAGCTGAGGGAGCAACGAAAAAAACAATTTATAACGTTATGTTTTGG
GGTGGTTGTTTTGGGGATTACAACCGTATTTGGGGGATGGTTTTATTTTGACCATAAATTAGATGATCAAGAGCAAGCGA
ATCAGCTCATTATGAGCACAAATCAGAACCTTGATCAGCAATTAAAAACATTAAACGGCTTACAGGAACAGCGTGATGCC
ATTATTGAACGCATGAAGTTGATTCAAGGTTTGCAGAGTCAACGTCCAGTAGTGGTAAGACTTGTTGATGAGTTAGTTCG
AGTCACACCATCAGCTATGTATTTAACGAAATTTAGCCGAACCGGAGATAAGTTTACGATTGAAGGTAAAGCTGAAAGTC
CAAATACAGTAGCCGAACTACTCCGTAATCTTGAAGCATCTCCTTGGTATCGTAATGCTTTTATGAACTCTTTCTTGGCT
AATGAAGAGAAAAAAGATAACGCTGCAAGTTCTCTTCTTCCTAGGGTGGAAGACCACTATGGTAGTTTTGTTGTGACTGT
CGATTTGGGGGAAATGGGCGTGGCCACAACGGATGATTCTGCTAAGCCATCTACAGGTGAAAGTGTGGGGGCTGCTAAAT
GA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(100-167)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Acinetobacter baumannii D1279779

99.061

100

0.991
  comN Acinetobacter baylyi ADP1

72.115

97.653

0.704