Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   H9K48_RS04690 Genome accession   NZ_CP064033
Coordinates   994083..994682 (+) Length   199 a.a.
NCBI ID   WP_005460088.1    Uniprot ID   Q87MQ4
Organism   Vibrio parahaemolyticus strain DLM1805     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 989083..999682
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H9K48_RS23360 - 990235..990366 (+) 132 WP_005380608.1 hypothetical protein -
  H9K48_RS04670 (H9K48_04665) - 990382..990786 (+) 405 WP_086585176.1 YbaN family protein -
  H9K48_RS04675 (H9K48_04670) apt 990952..991497 (+) 546 WP_086585177.1 adenine phosphoribosyltransferase -
  H9K48_RS04680 (H9K48_04675) dnaX 991506..993641 (+) 2136 WP_086585178.1 DNA polymerase III subunit gamma/tau -
  H9K48_RS04685 (H9K48_04680) - 993724..994053 (+) 330 WP_005460082.1 YbaB/EbfC family nucleoid-associated protein -
  H9K48_RS04690 (H9K48_04685) recR 994083..994682 (+) 600 WP_005460088.1 recombination mediator RecR Machinery gene
  H9K48_RS04695 (H9K48_04690) aqpZ 994733..995431 (-) 699 WP_005460095.1 aquaporin Z -
  H9K48_RS04700 (H9K48_04695) - 995638..996897 (-) 1260 WP_042760673.1 amino acid permease -
  H9K48_RS04705 (H9K48_04700) - 997215..997595 (+) 381 WP_005479566.1 RidA family protein -
  H9K48_RS04710 (H9K48_04705) - 997611..998888 (+) 1278 WP_086585179.1 L-serine ammonia-lyase, iron-sulfur-dependent, subunit alpha -
  H9K48_RS04715 (H9K48_04710) - 998917..999576 (+) 660 WP_170926644.1 PAS domain-containing protein -

Sequence

Protein


Download         Length: 199 a.a.        Molecular weight: 21725.73 Da        Isoelectric Point: 5.7468

>NTDB_id=441223 H9K48_RS04690 WP_005460088.1 994083..994682(+) (recR) [Vibrio parahaemolyticus strain DLM1805]
MRTSHMLEQLMEALRCLPGVGPKSAQRMAFHLLQRDRKGGLQLADALSQSMTEIGHCAECRTFTEEEVCHICTNPKRQEN
GQICVVESPADIAAVEATGQYSGRYFVLMGHLSPLDGIGPSDIGLDVLDYRLRRGDISEVILATNPTVEGEATAHYIAEL
CREHQVEASRIAHGVPVGGELELVDGTTLSHSLLGRHKI

Nucleotide


Download         Length: 600 bp        

>NTDB_id=441223 H9K48_RS04690 WP_005460088.1 994083..994682(+) (recR) [Vibrio parahaemolyticus strain DLM1805]
ATGCGTACCAGTCATATGCTGGAACAATTGATGGAGGCCTTACGTTGTCTACCTGGGGTAGGTCCCAAGTCGGCGCAACG
TATGGCCTTTCATTTGTTACAGCGTGATAGAAAAGGCGGTCTGCAACTGGCAGATGCGCTGAGTCAGTCAATGACCGAAA
TTGGTCACTGTGCTGAATGTCGAACTTTTACTGAAGAAGAAGTTTGCCACATTTGTACTAACCCAAAACGCCAAGAAAAC
GGCCAAATTTGTGTAGTAGAAAGCCCGGCAGATATCGCAGCAGTTGAAGCGACGGGTCAATACTCCGGTCGATACTTTGT
GCTTATGGGGCATTTGTCTCCGCTTGATGGCATCGGTCCAAGTGATATTGGTTTAGACGTGCTTGATTATCGTCTACGTC
GAGGTGATATTTCTGAAGTGATCCTTGCAACCAACCCAACGGTTGAGGGAGAAGCTACTGCTCACTATATTGCGGAGTTG
TGCAGAGAGCACCAAGTCGAAGCTAGCCGTATCGCGCACGGTGTGCCTGTAGGTGGGGAGCTTGAGCTTGTAGATGGCAC
GACCTTGTCACACTCATTATTGGGTCGACATAAGATTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q87MQ4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

44.724

100

0.447
  recR Bacillus subtilis subsp. subtilis str. 168

43.216

100

0.432