Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilO   Type   Machinery gene
Locus tag   HIN87_RS04640 Genome accession   NZ_CP051869
Coordinates   944644..945384 (-) Length   246 a.a.
NCBI ID   WP_031999622.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain Ab-D10a-a     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 939644..950384
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HIN87_RS04620 (HIN87_04620) aroB 940186..941268 (-) 1083 WP_001193997.1 3-dehydroquinate synthase -
  HIN87_RS04625 (HIN87_04625) aroK 941297..941866 (-) 570 WP_000643712.1 shikimate kinase AroK -
  HIN87_RS04630 (HIN87_04630) pilQ 941878..944043 (-) 2166 WP_031999626.1 type IV pilus secretin PilQ family protein Machinery gene
  HIN87_RS04635 (HIN87_04635) pilP 944106..944633 (-) 528 WP_057049054.1 pilus assembly protein PilP Machinery gene
  HIN87_RS04640 (HIN87_04640) pilO 944644..945384 (-) 741 WP_031999622.1 type 4a pilus biogenesis protein PilO Machinery gene
  HIN87_RS04645 (HIN87_04645) pilN 945381..946022 (-) 642 WP_169030851.1 PilN domain-containing protein Machinery gene
  HIN87_RS04650 (HIN87_04650) pilM 946022..947080 (-) 1059 WP_002014066.1 pilus assembly protein PilM Machinery gene
  HIN87_RS04655 (HIN87_04655) ponA 947242..949797 (+) 2556 WP_031999621.1 penicillin-binding protein PBP1a -

Sequence

Protein


Download         Length: 246 a.a.        Molecular weight: 27919.68 Da        Isoelectric Point: 4.6475

>NTDB_id=441225 HIN87_RS04640 WP_031999622.1 944644..945384(-) (pilO) [Acinetobacter baumannii strain Ab-D10a-a]
MSQDELQELSLEQLSAKKKKFNLDKFLQQFNTLDMNNYGSWPISVKITCWIFIFFAVLALGYFIVIQPKLQAIDNAQAQE
SNLLNEFREKDSKLRNLQQYQVQLQEMQENFNQQLEQLPKETEIPSLVEDINLTGVNSGLKFKNIRLEDEVKQEIFIEQP
IAIEATGDYHAFGAFVSSIAALPRIVTMHDFTVDVSPAKDNKSDIPVLNYSIKAKTYRYVGATDTSEQMGNPPAASASTN
TTVQPK

Nucleotide


Download         Length: 741 bp        

>NTDB_id=441225 HIN87_RS04640 WP_031999622.1 944644..945384(-) (pilO) [Acinetobacter baumannii strain Ab-D10a-a]
ATGAGTCAAGACGAACTTCAAGAATTGTCATTAGAACAATTATCTGCAAAGAAAAAGAAATTTAATCTCGATAAATTCCT
TCAGCAATTTAATACGCTGGATATGAACAACTACGGTAGTTGGCCAATATCTGTAAAAATTACGTGTTGGATTTTTATTT
TCTTTGCTGTGTTAGCTTTGGGGTATTTCATTGTTATTCAACCGAAATTACAAGCTATTGATAATGCTCAAGCTCAGGAA
AGCAATTTATTAAACGAATTTCGTGAAAAAGACTCGAAATTACGTAACCTGCAACAGTATCAGGTACAGCTTCAAGAAAT
GCAGGAAAATTTCAACCAGCAACTAGAGCAGTTACCAAAAGAAACTGAGATTCCGAGTTTAGTTGAAGATATCAACTTAA
CAGGAGTGAACTCTGGATTGAAATTTAAAAATATTCGCTTGGAAGATGAAGTAAAGCAGGAAATTTTTATTGAGCAACCA
ATTGCCATAGAAGCGACCGGGGACTATCACGCATTTGGAGCTTTTGTAAGTAGTATCGCTGCTTTGCCTCGTATTGTAAC
CATGCACGATTTTACTGTTGATGTATCGCCAGCTAAAGATAACAAGTCTGATATTCCTGTGCTGAACTATTCCATTAAAG
CAAAAACATACCGATACGTAGGGGCAACAGATACATCGGAGCAGATGGGCAACCCTCCAGCAGCATCTGCTTCAACGAAC
ACTACTGTTCAGCCGAAATAG

Domains

Predicted by InterproScan.

Pilus assembly protein, PilO (PilO)

(73-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilO Acinetobacter baumannii D1279779

98.374

100

0.984
  comO Acinetobacter baylyi ADP1

68.724

98.78

0.679