Detailed information NTG0044121

Bioinformatically predicted

Overview

• Name: ruvB
• Type: Machinery gene
• Locus tag: B739_RS02215
• Genome accession: NC_018609
• Coordinates: 487379..488401 (+)
• Length: 340 a.a.
• NCBI ID: WP_014937509.1
• Uniprot ID: -
• Organism: Riemerella anatipestifer RA-CH-1
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 482379..493401

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
B739_RS02185 (B739_0451)	-	482819..483967 (+)	1149	WP_014937504.1	aldo/keto reductase	-
B739_RS02190 (B739_0452)	-	483979..484743 (+)	765	WP_014937505.1	enoyl-CoA hydratase/isomerase family protein	-
B739_RS02195 (B739_0453)	-	484769..485200 (+)	432	WP_004916535.1	dCMP deaminase family protein	-
B739_RS02200 (B739_0454)	xerD	485201..486112 (+)	912	WP_014937506.1	site-specific tyrosine recombinase XerD	-
B739_RS02205 (B739_0455)	-	486117..486629 (+)	513	WP_014937507.1	NUDIX domain-containing protein	-
B739_RS02210 (B739_0456)	-	486709..487215 (+)	507	WP_014937508.1	ferritin	-
B739_RS02215 (B739_0457)	ruvB	487379..488401 (+)	1023	WP_014937509.1	Holliday junction branch migration DNA helicase RuvB	Machinery gene
B739_RS02220 (B739_0458)	-	488439..489305 (+)	867	WP_014937510.1	MBL fold metallo-hydrolase	-
B739_RS02225 (B739_0459)	coaE	489321..489911 (+)	591	WP_014937511.1	dephospho-CoA kinase	-
B739_RS02230 (B739_0460)	-	489925..490914 (+)	990	WP_014937512.1	cation diffusion facilitator family transporter	-
B739_RS02235 (B739_0461)	uvrC	490934..492724 (+)	1791	WP_014937513.1	excinuclease ABC subunit UvrC	Machinery gene

Sequence

Protein

• Length: 340 a.a.
• Molecular weight: 38059.70 Da
• Isoelectric Point: 5.0754

>NTDB_id=44121 B739_RS02215 WP_014937509.1 487379..488401(+) (ruvB) [Riemerella anatipestifer RA-CH-1]
MPDFLHPDKENYSAEELLLEEQIRPQSFKDFAGQRRTLDNLEVFVAAAKKRGSALDHTLLHGPPGLGKTTLAHIIANELG
VGFKVTSGPVLDKPGSLAGLLTNLEENDVLFIDEIHRLSPVVEEYLYSAMEDYKIDIMLETGPNARSVQINLNPFTLVGA
TTRSGMLTKPMLARFGIQSRLEYYTVELLGMIIERSARVLGVPIYEDAALEIARRSRGTPRIANALLRRVRDFAEIKGNG
EIEIKITKFALDSLNVDEFGLDDMDNKIMRVMIENFKGKPVGISALATSIGENPETLEEVYEPFLIQEGFIIRTPRGREV
TDKAYQHLNINRTKNMGELF

Nucleotide

• Length: 1023 bp

>NTDB_id=44121 B739_RS02215 WP_014937509.1 487379..488401(+) (ruvB) [Riemerella anatipestifer RA-CH-1]
ATGCCAGACTTCTTACATCCAGATAAAGAAAATTATTCAGCCGAAGAGCTTTTATTAGAAGAGCAAATACGCCCTCAATC
GTTCAAAGATTTTGCGGGACAAAGGCGTACTTTAGATAATTTAGAAGTCTTTGTAGCGGCTGCCAAAAAACGAGGTTCTG
CACTAGACCACACACTTCTGCACGGTCCTCCAGGGTTAGGAAAAACCACTCTAGCCCACATTATTGCTAATGAATTGGGG
GTGGGTTTTAAAGTAACCTCTGGTCCTGTCTTAGACAAACCTGGAAGTTTAGCTGGACTTCTTACCAATTTAGAAGAAAA
TGATGTTCTTTTCATAGACGAAATACACCGTTTATCTCCCGTAGTAGAAGAGTATCTCTATTCCGCTATGGAAGATTACA
AGATAGATATTATGCTAGAAACAGGACCTAATGCTCGTTCAGTGCAAATCAATCTTAATCCATTTACTTTAGTTGGAGCT
ACTACAAGAAGCGGTATGCTTACCAAACCAATGCTAGCTAGATTCGGGATACAATCTAGATTAGAGTACTACACAGTAGA
ACTTTTAGGTATGATTATCGAAAGAAGTGCTAGAGTGCTTGGCGTTCCTATTTATGAAGATGCTGCACTAGAGATAGCTA
GAAGAAGCCGAGGCACTCCTAGAATTGCGAATGCTCTACTTCGCCGTGTGCGAGATTTTGCAGAAATAAAAGGCAATGGT
GAGATAGAAATAAAGATAACCAAATTCGCACTAGATTCTCTCAATGTAGATGAGTTTGGGCTTGATGATATGGACAACAA
AATTATGAGAGTAATGATAGAGAACTTCAAAGGTAAACCTGTGGGAATTTCTGCATTAGCCACTTCCATCGGAGAAAATC
CAGAGACTTTGGAAGAAGTTTATGAGCCTTTTTTAATTCAAGAAGGATTCATCATCAGAACACCAAGAGGTCGAGAAGTT
ACCGATAAGGCTTACCAACACCTTAACATCAATAGAACTAAAAATATGGGAGAGCTTTTCTAA

Domains

Predicted by InterProScan.

• RuvB AAA lid domain (AAA_lid_4) (184-257)

• RuvB C-terminal winged helix domain (WHD_RuvB) (258-329)

• Holliday junction DNA helicase RuvB P-loop domain (RuvB_N) (23-181)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ruvB	Streptococcus pneumoniae TIGR4	57.143	92.647	0.529
ruvB	Streptococcus pneumoniae R6	57.143	92.647	0.529
ruvB	Streptococcus pneumoniae D39	57.143	92.647	0.529
ruvB	Bacillus subtilis subsp. subtilis str. 168	56.508	92.647	0.524
ruvB	Synechocystis sp. PCC 6803	47.447	97.941	0.465
ruvB	Helicobacter pylori 26695	47.937	92.647	0.444