Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrC   Type   Machinery gene
Locus tag   B739_RS02235 Genome accession   NC_018609
Coordinates   490934..492724 (+) Length   596 a.a.
NCBI ID   WP_014937513.1    Uniprot ID   -
Organism   Riemerella anatipestifer RA-CH-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 485934..497724
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B739_RS02205 (B739_0455) - 486117..486629 (+) 513 WP_014937507.1 NUDIX domain-containing protein -
  B739_RS02210 (B739_0456) - 486709..487215 (+) 507 WP_014937508.1 ferritin -
  B739_RS02215 (B739_0457) ruvB 487379..488401 (+) 1023 WP_014937509.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  B739_RS02220 (B739_0458) - 488439..489305 (+) 867 WP_014937510.1 MBL fold metallo-hydrolase -
  B739_RS02225 (B739_0459) coaE 489321..489911 (+) 591 WP_014937511.1 dephospho-CoA kinase -
  B739_RS02230 (B739_0460) - 489925..490914 (+) 990 WP_014937512.1 cation diffusion facilitator family transporter -
  B739_RS02235 (B739_0461) uvrC 490934..492724 (+) 1791 WP_014937513.1 excinuclease ABC subunit UvrC Machinery gene
  B739_RS02240 (B739_0462) - 492765..494390 (+) 1626 WP_158454208.1 T9SS type A sorting domain-containing protein -
  B739_RS02245 (B739_0463) - 494380..494793 (-) 414 WP_038693541.1 VanZ family protein -
  B739_RS02250 (B739_0464) lnt 494851..496494 (+) 1644 WP_014937516.1 apolipoprotein N-acyltransferase -
  B739_RS02255 (B739_0465) - 496529..497527 (+) 999 WP_014937517.1 aminoglycoside phosphotransferase family protein -

Sequence

Protein


Download         Length: 596 a.a.        Molecular weight: 69231.02 Da        Isoelectric Point: 9.0407

>NTDB_id=44122 B739_RS02235 WP_014937513.1 490934..492724(+) (uvrC) [Riemerella anatipestifer RA-CH-1]
MNETLELQLKTLPKEPGVYRYYDEAGQLLYVGKAKNLKNRVLSYFNKSQVGYKTRIMVKKIHRLEITIVPSEYDALLLEN
NLIKEHQPFYNIMMKDDKSFPWLCIKNEPFPRLFLTRKRIKDGSEYYGPYAKVKPARVLLETIKNLYKIRTCTLNLSEDR
IEKANYKVCLEYHIKNCEGPCEGLESEEDYEKKINAVRGIIKGDFRLAKAYLEEEMLKHASNLEFEKAQMVKEKLEFLED
YQVKHTVVNPSIDDVDVFGMVSDETAAYINYFKIRNGNIVQSYTSEFRKKLEESDEEILEEAVVAIRDKFQSESKEILLP
FHLGTEIPQVKLIVPKVGDKKRIVELSEKNAREYRLEKLKQIQIVDPDRHTNRIMAEMKTLLRLPEEPRHIEGFDNSNIQ
GTNPVSACVVFKDGKPSKKDYRIFHIKTVEGPNDFASMEEVIYRRYKRYLDEGEPLPQLILIDGGKGQLSSAVKSLKKLD
LYGKISIIGIAKRLEELFFPNDPIPLYLDKTSETLKVLQRVRDEAHRFGMKHHRTRRTNSTIKSELEEIPGVGAKSIELL
LSKLKSVKRIKEASQETLEEILGKSKGSIVWQYFNG

Nucleotide


Download         Length: 1791 bp        

>NTDB_id=44122 B739_RS02235 WP_014937513.1 490934..492724(+) (uvrC) [Riemerella anatipestifer RA-CH-1]
GTGAATGAGACTTTAGAACTTCAGCTAAAAACTTTACCAAAAGAACCTGGCGTTTACCGCTACTATGACGAAGCGGGACA
ACTGCTCTATGTAGGGAAAGCCAAAAACCTTAAAAACAGAGTGCTATCCTACTTCAATAAAAGTCAAGTGGGTTACAAGA
CTAGAATTATGGTTAAAAAAATCCACCGCTTAGAGATTACTATAGTTCCCAGCGAATACGACGCCCTCCTTTTAGAAAAC
AACCTCATCAAGGAACATCAGCCTTTCTACAATATTATGATGAAAGACGACAAAAGTTTCCCTTGGTTGTGCATCAAAAA
TGAACCATTCCCTAGGCTATTTCTTACCAGAAAACGCATTAAAGATGGCTCCGAATATTATGGTCCTTACGCTAAAGTAA
AACCCGCTAGAGTACTTTTAGAAACCATTAAAAACCTCTATAAAATAAGGACTTGTACGCTTAATCTTTCTGAAGACAGG
ATAGAGAAAGCCAATTATAAAGTCTGTCTAGAATACCATATTAAAAACTGCGAAGGTCCTTGCGAAGGTCTAGAAAGCGA
GGAAGATTACGAAAAGAAAATCAATGCTGTGAGAGGAATTATAAAAGGAGATTTCCGTTTGGCAAAAGCCTACTTAGAAG
AGGAGATGCTAAAACACGCCTCCAACCTAGAGTTTGAAAAAGCTCAAATGGTAAAGGAAAAGTTGGAGTTTTTGGAAGAT
TATCAGGTTAAACACACTGTGGTTAATCCTAGTATAGATGATGTAGATGTTTTTGGTATGGTGAGTGATGAAACGGCGGC
TTACATCAATTATTTTAAAATCAGAAATGGAAATATTGTTCAAAGTTATACTTCCGAATTCAGAAAAAAACTAGAAGAAA
GCGACGAGGAGATACTAGAAGAAGCTGTAGTTGCAATTAGAGATAAGTTTCAATCCGAATCTAAGGAAATATTACTGCCG
TTCCATTTAGGCACCGAAATTCCTCAAGTGAAACTCATCGTTCCGAAAGTGGGAGACAAAAAGAGAATTGTAGAACTCTC
CGAAAAAAATGCGAGAGAATATCGTCTAGAAAAACTAAAGCAAATCCAAATTGTAGACCCAGACCGCCATACCAATCGCA
TTATGGCAGAGATGAAAACGCTCCTTAGACTTCCAGAAGAACCAAGACACATTGAGGGGTTTGACAATTCTAATATCCAA
GGGACTAACCCTGTGTCTGCCTGTGTTGTATTTAAAGACGGTAAACCAAGCAAGAAGGACTATCGTATTTTCCACATCAA
AACCGTAGAAGGTCCTAACGACTTCGCTTCTATGGAAGAAGTGATTTACCGAAGGTACAAAAGATATTTAGATGAAGGCG
AGCCTCTACCTCAACTGATATTGATAGACGGCGGTAAGGGACAACTGAGTTCTGCCGTTAAAAGTTTGAAAAAGTTAGAT
TTATATGGTAAAATCTCCATCATAGGTATTGCTAAAAGGTTAGAAGAGCTATTTTTCCCTAACGACCCCATTCCTTTATA
TTTAGACAAAACTTCGGAAACACTTAAAGTCTTACAAAGAGTGAGAGACGAAGCCCACCGTTTTGGAATGAAGCACCACC
GCACCAGAAGAACCAACAGCACCATAAAATCAGAATTGGAAGAAATCCCAGGCGTTGGAGCTAAATCCATAGAGCTATTG
CTAAGTAAACTAAAATCAGTAAAGCGTATTAAAGAAGCCTCACAGGAAACCTTAGAGGAAATTTTAGGTAAGTCTAAAGG
CAGTATAGTATGGCAGTATTTTAATGGATAG

Domains

Predicted by InterProScan.

GIY-YIG catalytic domain (GIY-YIG)

(16-90)

UvrC RNAse H endonuclease domain (UvrC_RNaseH_dom)

(380-529)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrC Streptococcus pneumoniae R6

37.458

98.993

0.371
  uvrC Streptococcus pneumoniae D39

37.458

98.993

0.371
  uvrC Streptococcus pneumoniae TIGR4

37.288

98.993

0.369

Multiple sequence alignment