Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   PM3016_RS36580 Genome accession   NC_016935
Coordinates   8722992..8723477 (-) Length   161 a.a.
NCBI ID   WP_013921588.1    Uniprot ID   I0BVG6
Organism   Paenibacillus mucilaginosus 3016     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 8717992..8728477
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PM3016_RS36550 (PM3016_7463) rplI 8718308..8718751 (-) 444 WP_013921581.1 50S ribosomal protein L9 -
  PM3016_RS36555 (PM3016_7464) - 8718748..8720712 (-) 1965 WP_013921582.1 DHH family phosphoesterase -
  PM3016_RS36560 (PM3016_7465) - 8720742..8721677 (-) 936 WP_013921583.1 DUF2232 domain-containing protein -
  PM3016_RS36565 (PM3016_7466) - 8721683..8721985 (-) 303 WP_014372785.1 MazG-like family protein -
  PM3016_RS36570 (PM3016_7467) - 8722034..8722459 (-) 426 WP_014372786.1 CBS domain-containing protein -
  PM3016_RS36575 (PM3016_7468) rpsR 8722658..8722948 (-) 291 WP_013921587.1 30S ribosomal protein S18 -
  PM3016_RS36580 (PM3016_7469) ssbA 8722992..8723477 (-) 486 WP_013921588.1 single-stranded DNA-binding protein Machinery gene
  PM3016_RS36585 (PM3016_7470) rpsF 8723565..8723849 (-) 285 WP_013921589.1 30S ribosomal protein S6 -
  PM3016_RS36590 (PM3016_7471) - 8724092..8724277 (+) 186 WP_013921590.1 YjzC family protein -
  PM3016_RS36595 (PM3016_7472) - 8724363..8724614 (+) 252 WP_013921591.1 hypothetical protein -
  PM3016_RS36605 (PM3016_7473) - 8725326..8725559 (-) 234 WP_013921592.1 DUF951 domain-containing protein -
  PM3016_RS36610 (PM3016_7474) - 8725559..8726491 (-) 933 WP_013921593.1 mechanosensitive ion channel family protein -
  PM3016_RS36615 (PM3016_7475) - 8726534..8726776 (-) 243 WP_014372787.1 DUF3343 domain-containing protein -
  PM3016_RS36620 (PM3016_7476) yyaC 8726911..8727525 (+) 615 WP_014372788.1 spore protease YyaC -
  PM3016_RS36625 (PM3016_7477) - 8727500..8727994 (-) 495 WP_014372789.1 DUF4446 family protein -

Sequence

Protein


Download         Length: 161 a.a.        Molecular weight: 17570.28 Da        Isoelectric Point: 4.8013

>NTDB_id=44118 PM3016_RS36580 WP_013921588.1 8722992..8723477(-) (ssbA) [Paenibacillus mucilaginosus 3016]
MLNRVILIGRLTRDPELRYTPAGVAVTQFTLAVDRPFSSNQGQREADFIPVVTWRQLAETCANYLRKGRLAAVEGRIQVR
NYDNNEGRRVYVTEVIADNVRFLESPNSGNREDGSGMGGSSGGGSSSGGGNRGSYGGGREQQDPFQDDGRPIDISDDDLP
F

Nucleotide


Download         Length: 486 bp        

>NTDB_id=44118 PM3016_RS36580 WP_013921588.1 8722992..8723477(-) (ssbA) [Paenibacillus mucilaginosus 3016]
ATGTTGAATCGTGTGATTCTGATCGGAAGACTGACACGTGACCCTGAGCTTCGCTATACGCCTGCAGGCGTGGCTGTTAC
CCAGTTCACTCTGGCGGTAGACAGGCCGTTCTCGAGCAACCAAGGACAGCGCGAAGCGGATTTCATTCCGGTCGTGACTT
GGCGCCAGCTCGCGGAAACCTGTGCGAATTACCTTCGCAAAGGCCGGCTCGCTGCAGTGGAAGGCCGCATTCAAGTGCGT
AACTATGATAACAATGAAGGCCGCCGCGTATACGTGACGGAAGTCATTGCCGACAATGTGCGTTTCTTGGAATCGCCGAA
CAGCGGGAACCGTGAAGACGGCTCCGGCATGGGAGGCAGCAGCGGTGGTGGAAGCAGCAGTGGAGGCGGTAACCGTGGCA
GCTATGGCGGAGGACGCGAGCAACAGGATCCTTTCCAGGATGACGGCAGACCGATTGATATTTCCGATGATGATTTGCCG
TTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I0BVG6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

56.395

100

0.602
  ssb Latilactobacillus sakei subsp. sakei 23K

47.647

100

0.503
  ssb Neisseria meningitidis MC58

34.302

100

0.366
  ssb Neisseria gonorrhoeae MS11

32.955

100

0.36
  ssbB Bacillus subtilis subsp. subtilis str. 168

55.769

64.596

0.36

Multiple sequence alignment