Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   HER17_RS01050 Genome accession   NZ_CP051652
Coordinates   240610..242136 (-) Length   508 a.a.
NCBI ID   WP_039508690.1    Uniprot ID   A0AAI9L216
Organism   Pectobacterium carotovorum strain WPP14     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 235610..247136
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HER17_RS01025 (HER17_01035) ytfR 235766..237286 (+) 1521 WP_010294688.1 galactofuranose ABC transporter, ATP-binding protein YtfR -
  HER17_RS01030 (HER17_01040) ytfT 237273..238283 (+) 1011 WP_010294686.1 galactofuranose ABC transporter, ATP-binding protein YtfT -
  HER17_RS01035 (HER17_01045) yjfF 238283..239245 (+) 963 WP_010294682.1 galactofuranose ABC transporter, permease protein YjfF -
  HER17_RS01040 (HER17_01050) hdfR 239267..240094 (-) 828 WP_010294681.1 HTH-type transcriptional regulator HdfR -
  HER17_RS01045 (HER17_01055) - 240215..240553 (+) 339 WP_010283921.1 DUF413 domain-containing protein -
  HER17_RS01050 (HER17_01060) comM 240610..242136 (-) 1527 WP_039508690.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  HER17_RS01055 (HER17_01065) ilvL 242544..242642 (+) 99 WP_071531109.1 ilv operon leader peptide -
  HER17_RS01060 (HER17_01070) ilvG 242783..244429 (+) 1647 WP_010294675.1 acetolactate synthase 2 catalytic subunit -
  HER17_RS01065 (HER17_01075) ilvM 244508..244768 (+) 261 WP_010294673.1 acetolactate synthase 2 small subunit -
  HER17_RS01070 (HER17_01080) - 244794..245720 (+) 927 WP_010294671.1 branched-chain amino acid transaminase -

Sequence

Protein


Download         Length: 508 a.a.        Molecular weight: 55503.15 Da        Isoelectric Point: 6.5676

>NTDB_id=440260 HER17_RS01050 WP_039508690.1 240610..242136(-) (comM) [Pectobacterium carotovorum strain WPP14]
MSLAVTYTRAMIGVQAPDVYIEVHISSGLPALTLVGLPETTVKEARDRVRSALINCGFTFPAKRITVNLAPADLPKEGGR
YDLPIALAILAASEQIDGEKLSRYEFLGELGLSGTLRGVNGAIPAALEAIKAGRQLILPDDNKREMTLIPQGEALMAGHL
LDVCAFLSGEEELLSCSDMTPVPPIEEDTLDLKDIIGQEQAKRALEIAAAGGHNLLLLGPPGTGKTMLASRLGNLMPSLS
DEEALESAAINSLINIDATMTRWRARPFRAPHHSSSMAALVGGGSLPKPGEISLAHNGVLFLDELPEFERRVLDSLREPL
ESGEIIISRTRAKVCYPARVQLVAAMNPSPSGHYQGVHNRLPAQQILRYLSKLSGPFLDRFDLSIEVPLLPPGVLSQQHY
QGESSATIRERVLIARQIQLKRANKINALLTSREIEKHCGLEMADATYLEEVMNKLGLSVRAWHRILKVARTIADLGDRD
NIERKHLAEALSYRCMDRLLIQLHKSLE

Nucleotide


Download         Length: 1527 bp        

>NTDB_id=440260 HER17_RS01050 WP_039508690.1 240610..242136(-) (comM) [Pectobacterium carotovorum strain WPP14]
ATGTCATTGGCAGTTACCTATACTCGGGCAATGATTGGTGTACAAGCACCGGACGTTTATATCGAAGTTCACATCAGCAG
CGGGCTGCCGGCCCTAACGCTGGTGGGCTTACCTGAAACCACCGTCAAGGAAGCACGCGATCGCGTGCGCAGCGCACTCA
TCAATTGCGGATTTACGTTTCCAGCAAAGCGCATCACGGTCAATCTCGCTCCCGCAGACCTGCCAAAAGAAGGGGGACGC
TACGATCTGCCGATTGCTCTGGCGATTCTGGCGGCCTCAGAACAAATCGATGGTGAAAAGCTAAGCCGCTACGAGTTTCT
TGGCGAACTCGGCCTGTCTGGCACCTTACGTGGCGTCAATGGCGCGATTCCCGCCGCATTAGAAGCCATAAAAGCAGGCC
GCCAGCTTATCCTGCCAGATGACAATAAACGGGAGATGACGCTGATACCGCAGGGTGAAGCGCTAATGGCCGGGCATTTG
TTGGACGTGTGTGCTTTTCTCAGTGGGGAAGAGGAATTGCTCAGTTGCTCCGACATGACGCCCGTTCCACCGATCGAGGA
GGATACCCTCGATCTGAAGGATATCATCGGTCAGGAGCAGGCGAAACGCGCGTTGGAAATCGCGGCGGCAGGCGGCCATA
ACTTGCTCTTACTGGGGCCACCGGGAACCGGGAAAACCATGCTGGCAAGCCGATTAGGCAATCTGATGCCGTCATTAAGC
GATGAAGAAGCACTAGAAAGCGCCGCTATCAACAGTCTAATCAACATTGATGCCACCATGACGCGCTGGCGAGCCAGGCC
ATTCAGAGCACCTCACCATAGTTCCTCCATGGCTGCGCTCGTGGGCGGAGGGTCGCTGCCCAAACCCGGAGAGATCTCGC
TCGCCCACAACGGCGTGCTATTTCTGGATGAATTACCGGAGTTTGAGCGACGCGTTTTAGACTCACTACGAGAGCCTCTG
GAGTCCGGTGAAATTATCATTTCCCGCACTCGGGCTAAAGTGTGCTACCCAGCACGGGTGCAGCTCGTCGCCGCAATGAA
CCCCAGCCCTTCAGGCCACTATCAGGGCGTTCATAACCGATTGCCAGCACAACAAATACTGCGCTACCTCAGCAAACTTT
CCGGTCCCTTTTTGGATCGCTTTGACCTTTCAATCGAAGTCCCTTTGCTGCCTCCGGGGGTGTTATCTCAGCAGCATTAT
CAAGGCGAAAGCAGCGCGACGATTCGCGAGCGCGTGCTGATCGCACGGCAGATACAGCTGAAGCGGGCAAATAAAATCAA
CGCACTACTCACTTCACGTGAAATAGAAAAACATTGCGGATTGGAGATGGCTGATGCGACCTATTTGGAAGAGGTAATGA
ACAAACTTGGCTTATCCGTACGTGCATGGCACAGGATATTGAAAGTCGCGCGCACGATAGCTGACCTCGGCGATCGGGAC
AACATAGAGAGAAAACACCTTGCCGAAGCGCTGAGCTATCGCTGTATGGATCGATTGCTCATCCAGCTCCACAAAAGCCT
TGAATAG

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-494)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(191-390)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

63.834

99.606

0.636
  comM Vibrio cholerae strain A1552

64.016

99.016

0.634
  comM Glaesserella parasuis strain SC1401

63.261

100

0.634
  comM Vibrio campbellii strain DS40M4

62.648

99.606

0.624
  comM Legionella pneumophila str. Paris

50.701

98.228

0.498
  comM Legionella pneumophila strain ERS1305867

50.701

98.228

0.498
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.019

100

0.467