Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   HG421_RS16775 Genome accession   NZ_CP051651
Coordinates   3955690..3957210 (+) Length   506 a.a.
NCBI ID   WP_169707350.1    Uniprot ID   A0A7Z2ZIE7
Organism   Xanthomonas campestris pv. badrii strain NEB122     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3950690..3962210
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HG421_RS16755 (HG421_16755) - 3951772..3952428 (+) 657 WP_169707348.1 RIO1 family regulatory kinase/ATPase -
  HG421_RS16760 (HG421_16760) - 3952484..3954451 (-) 1968 WP_169707349.1 beta-N-acetylglucosaminidase domain-containing protein -
  HG421_RS16765 (HG421_16765) - 3954864..3955238 (-) 375 WP_275655074.1 P-II family nitrogen regulator -
  HG421_RS16770 (HG421_16770) - 3955390..3955674 (+) 285 WP_029221490.1 accessory factor UbiK family protein -
  HG421_RS16775 (HG421_16775) comM 3955690..3957210 (+) 1521 WP_169707350.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  HG421_RS16780 (HG421_16780) - 3957235..3957597 (-) 363 Protein_3274 transposase -
  HG421_RS16785 (HG421_16785) - 3957643..3958278 (-) 636 WP_169707351.1 hypothetical protein -
  HG421_RS16790 (HG421_16790) - 3958824..3958985 (+) 162 Protein_3276 lipocalin family protein -
  HG421_RS16795 (HG421_16795) - 3959041..3959358 (+) 318 WP_169705294.1 DUF1153 domain-containing protein -
  HG421_RS16800 (HG421_16800) - 3959358..3960182 (+) 825 WP_168968454.1 IS3 family transposase -
  HG421_RS16805 (HG421_16805) - 3960210..3960560 (+) 351 Protein_3279 lipocalin family protein -
  HG421_RS16810 (HG421_16810) - 3960667..3960843 (-) 177 WP_064507700.1 hypothetical protein -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 53730.37 Da        Isoelectric Point: 8.3405

>NTDB_id=440257 HG421_RS16775 WP_169707350.1 3955690..3957210(+) (comM) [Xanthomonas campestris pv. badrii strain NEB122]
MSLALVHSRARVGVHAPEVRVEVHLSGGLPSTQIVGLPEAAVRESRERVRAALLCAQFEFPARRITINLAPADLPKEGGR
FDMPIALGILAASGQIDRQALAEYEFLGELALTGELRGVDGVLPAALAAAQAGRRLIVPLSNGAEAAIAGHVQAFTARTL
LEVCAALNGTQPAPAAELAGATLGARALPDMADVRGQPHARRALEIAAAGGHHLLLVGSPGCGKTLLASRLPGLLPDASE
AEALETAAITSVSGRGLDLARWRQRPYRSPHHTASAVALVGGGTHPRPGEISLAHNGVLFLDELPEWQRQTLEVLREPLE
SGLVTISRAARSVDFPARFQLVAAMNPCPCGWAGDGSGRCRCSSDSIRRYRSRISGPLLDRIDLHVEVPRLPAQALRSGT
PGEDSASVRARVVAARQRQLARGALPNAQLDQPDTDRHCRLQGDDQVLLERAIEHLQLSARSMHRILRVARTIADLDDSA
DIATRHLTEAIGYRKLDRALGTASAA

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=440257 HG421_RS16775 WP_169707350.1 3955690..3957210(+) (comM) [Xanthomonas campestris pv. badrii strain NEB122]
ATGAGTCTGGCGCTGGTGCACAGCCGTGCCCGCGTGGGGGTGCACGCGCCTGAGGTTCGGGTGGAGGTGCATCTGTCCGG
CGGTCTTCCCTCCACCCAGATCGTGGGCCTGCCCGAAGCGGCGGTGCGCGAGTCGCGCGAGCGCGTACGTGCGGCGTTGC
TCTGCGCGCAGTTCGAATTTCCGGCCCGGCGCATCACCATCAACCTGGCGCCTGCGGATCTGCCCAAGGAGGGCGGTCGT
TTCGACATGCCGATCGCGCTTGGCATCCTGGCCGCCAGCGGGCAGATCGACCGCCAGGCATTGGCCGAGTATGAGTTTCT
CGGCGAGCTGGCGTTGACCGGCGAGCTGCGCGGCGTCGACGGCGTGCTGCCGGCCGCCCTGGCCGCCGCACAGGCGGGGC
GACGGCTGATCGTGCCGCTGAGCAATGGCGCCGAGGCGGCCATCGCCGGGCATGTCCAGGCCTTCACTGCGCGGACCCTG
CTGGAGGTCTGCGCCGCCCTCAACGGCACCCAGCCGGCGCCTGCCGCGGAACTGGCAGGCGCCACGCTCGGCGCACGTGC
GCTACCGGATATGGCCGACGTGCGCGGGCAACCGCATGCGCGCCGCGCGCTGGAGATCGCCGCCGCCGGAGGGCATCACC
TGCTGCTGGTCGGCAGCCCCGGATGCGGCAAGACCTTGCTGGCCTCGCGCCTGCCCGGCCTGCTGCCGGACGCCAGCGAA
GCCGAAGCACTGGAAACGGCTGCCATCACCTCGGTCAGCGGCCGTGGGCTGGATCTGGCCCGCTGGCGCCAGCGGCCCTA
CCGGTCCCCGCACCACACCGCCAGTGCGGTTGCCCTGGTCGGCGGCGGCACGCACCCGCGCCCCGGCGAGATTTCGCTGG
CGCACAACGGCGTGCTGTTCCTGGACGAACTGCCCGAGTGGCAACGGCAGACCCTGGAAGTGCTGCGCGAGCCGCTGGAA
TCGGGACTGGTCACGATCTCGCGTGCGGCGCGCAGCGTGGATTTTCCGGCACGCTTCCAGTTGGTCGCAGCCATGAACCC
CTGCCCGTGCGGCTGGGCGGGCGATGGCAGCGGCCGGTGCCGCTGCAGCAGCGACAGCATCCGCCGCTACCGCAGCCGCA
TTTCCGGGCCACTGCTGGACCGCATCGACCTGCATGTGGAAGTGCCGCGGCTGCCGGCGCAGGCGCTGCGTAGCGGCACC
CCCGGTGAGGACAGCGCCAGCGTGCGTGCCCGCGTGGTCGCCGCGCGGCAGCGGCAGCTCGCGCGCGGCGCTCTTCCAAA
CGCACAGCTCGATCAGCCCGACACCGACCGCCACTGCCGGCTGCAAGGCGACGACCAGGTGCTGCTGGAACGCGCGATCG
AGCACCTGCAGCTGTCCGCACGTTCGATGCACCGCATCCTGCGCGTGGCGCGCACCATCGCCGATCTCGACGACAGCGCG
GACATCGCCACCCGCCATCTCACCGAAGCGATCGGCTACCGCAAGCTGGATCGCGCACTCGGCACCGCCAGCGCGGCGTA
G

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-494)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-394)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7Z2ZIE7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

56.522

100

0.565
  comM Glaesserella parasuis strain SC1401

54.743

100

0.547
  comM Haemophilus influenzae Rd KW20

53.922

100

0.543
  comM Vibrio campbellii strain DS40M4

53.755

100

0.538
  comM Legionella pneumophila str. Paris

51.093

99.407

0.508
  comM Legionella pneumophila strain ERS1305867

51.093

99.407

0.508
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.047

100

0.46