Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   HHJ56_RS09570 Genome accession   NZ_CP051642
Coordinates   2007098..2008633 (-) Length   511 a.a.
NCBI ID   WP_035686457.1    Uniprot ID   -
Organism   Avibacterium paragallinarum strain ADL-AP01     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 2002098..2013633
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HHJ56_RS09555 (HHJ56_09555) - 2003317..2003754 (+) 438 WP_035686475.1 hypothetical protein -
  HHJ56_RS09560 (HHJ56_09560) - 2004016..2005380 (+) 1365 WP_035686462.1 diaminobutyrate--2-oxoglutarate transaminase -
  HHJ56_RS09565 (HHJ56_09565) - 2005458..2006990 (+) 1533 WP_046097282.1 aspartate aminotransferase family protein -
  HHJ56_RS09570 (HHJ56_09570) comM 2007098..2008633 (-) 1536 WP_035686457.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  HHJ56_RS09575 (HHJ56_09575) trmB 2008962..2009714 (+) 753 WP_035686455.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  HHJ56_RS09580 (HHJ56_09580) - 2009743..2010081 (+) 339 WP_035686453.1 YggL family protein -
  HHJ56_RS09585 (HHJ56_09585) selA 2010326..2011711 (+) 1386 WP_035686450.1 L-seryl-tRNA(Sec) selenium transferase -
  HHJ56_RS09590 (HHJ56_09590) selB 2011708..2013567 (+) 1860 WP_035686447.1 selenocysteine-specific translation elongation factor -

Sequence

Protein


Download         Length: 511 a.a.        Molecular weight: 55894.41 Da        Isoelectric Point: 9.9640

>NTDB_id=440183 HHJ56_RS09570 WP_035686457.1 2007098..2008633(-) (comM) [Avibacterium paragallinarum strain ADL-AP01]
MSLAIVYSRASMGVQAPLVTIEVHLSNGKPGFTLVGLPEKTVKEAQDRVRSALLNANFKYPAKRITVNLAPADLPKDGGR
FDLPIAIGILAASDQVNPQALKQFELLGELALTGHLRGVHGIIPAILAARKVKRRTIIAKSNANEAALVADQESYIAQNL
LEVVQFLNDTLKLPLASDFTTPSAVDFSCKNPQDLTDIIGQQHAKRALTIAAAGQHNLLLLGPPGTGKTMLASRLTTLLP
EMTEQEAIETASITSLVQNELNFHNWKQRPFRSPHHSASLPALVGGGTIPRPGEISLAHNGVLFLDELPEFDRKVLDALR
QPLESGEIIISRANAKICFPARFQLIAAMNPSPTGHYTGVHNRTSPQQVMRYLNRLSGPFLDRFDLSIEVPLLPKGTLQQ
IENKGETSEQVRAKILQVREQQFARAGKINAHLTSKEIARDCAISAQDGAFLENTLTQLGLSVRAYHRILKVARTIADLN
NEAQIQRPHLAEALSYRAMDRLLQKLSRNLG

Nucleotide


Download         Length: 1536 bp        

>NTDB_id=440183 HHJ56_RS09570 WP_035686457.1 2007098..2008633(-) (comM) [Avibacterium paragallinarum strain ADL-AP01]
ATGTCATTAGCTATCGTTTACAGTCGTGCGTCAATGGGGGTTCAAGCTCCCTTAGTTACCATTGAGGTGCATTTAAGCAA
TGGAAAGCCAGGTTTTACCCTTGTGGGATTACCAGAAAAAACGGTGAAAGAAGCACAAGATCGCGTGCGAAGTGCGTTAT
TAAATGCCAATTTCAAATATCCTGCCAAGCGAATTACCGTGAATCTTGCCCCTGCGGATTTACCTAAGGACGGTGGACGG
TTTGATTTGCCCATTGCAATTGGCATTTTAGCCGCTTCCGATCAAGTAAATCCTCAAGCACTCAAACAATTTGAGTTATT
AGGCGAGTTGGCTTTAACGGGACATCTGCGTGGCGTACACGGCATTATTCCTGCGATTTTAGCTGCAAGAAAGGTAAAGC
GTCGTACCATAATTGCGAAATCCAACGCGAATGAAGCCGCCCTAGTCGCTGATCAAGAGAGTTACATCGCTCAAAATTTG
CTTGAAGTGGTACAGTTTCTTAATGATACATTAAAACTCCCCCTTGCCTCAGATTTCACGACACCAAGTGCGGTAGATTT
TTCTTGCAAAAATCCCCAAGATCTCACAGATATTATCGGACAACAGCACGCTAAACGAGCCTTAACCATTGCCGCAGCAG
GGCAACATAATTTGCTCCTACTCGGCCCACCTGGCACGGGCAAAACAATGCTCGCCAGCCGTTTAACCACGCTGTTGCCT
GAGATGACGGAACAAGAAGCCATTGAAACCGCTTCCATAACTAGTTTAGTGCAAAATGAGCTGAATTTTCATAACTGGAA
ACAACGCCCTTTCCGTTCGCCACACCATAGTGCCTCCTTACCTGCTTTGGTGGGTGGGGGAACAATCCCAAGACCAGGCG
AAATTTCCCTAGCACATAATGGCGTACTATTTTTAGATGAACTGCCCGAATTTGATCGCAAAGTGCTTGACGCATTACGT
CAGCCGTTAGAAAGTGGGGAAATTATTATTTCGCGTGCCAATGCAAAAATTTGTTTTCCCGCTAGATTTCAGCTTATTGC
CGCAATGAACCCTAGCCCCACAGGGCATTACACGGGCGTACATAATCGCACCTCCCCCCAGCAGGTAATGCGTTATTTAA
ATCGCCTTTCGGGACCATTTTTAGATCGCTTTGATTTATCCATTGAAGTACCATTGCTTCCCAAAGGCACGCTACAACAA
ATTGAAAATAAAGGGGAAACCAGCGAACAGGTGAGAGCAAAGATTTTACAGGTTCGTGAACAACAATTCGCTCGTGCAGG
AAAAATTAACGCCCATCTCACCAGTAAAGAAATCGCACGGGATTGTGCAATCTCCGCACAAGATGGGGCTTTTTTAGAAA
ACACCTTAACCCAATTAGGGCTTTCAGTGCGTGCTTACCACCGCATTTTAAAAGTCGCACGCACCATCGCCGATCTAAAT
AATGAAGCACAAATTCAACGCCCCCACTTAGCCGAAGCCCTCTCTTATCGAGCAATGGATCGACTACTACAAAAGCTGTC
TCGTAATCTAGGTTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(405-497)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(194-395)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

82.643

99.217

0.82
  comM Glaesserella parasuis strain SC1401

75.345

99.217

0.748
  comM Vibrio cholerae strain A1552

65.286

99.217

0.648
  comM Vibrio campbellii strain DS40M4

63.708

99.217

0.632
  comM Legionella pneumophila str. Paris

50.299

98.043

0.493
  comM Legionella pneumophila strain ERS1305867

50.299

98.043

0.493
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.484

100

0.466