NTDB

Overview

Name	dprA	Type	Machinery gene
Locus tag	IQS24_RS19645	Genome accession	NZ_CP063473
Coordinates	4062578..4063702 (-)	Length	374 a.a.
NCBI ID	WP_205595500.1	Uniprot ID	-
Organism	Escherichia coli strain EM18-18-42
Function	ssDNA binding; loading RecA onto ssDNA (predicted from homology) DNA processing

Genomic Context

Location: 4057578..4068702

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
IQS24_RS19615 (IQS24_19620)	yrdA	4059378..4059932 (+)	555	WP_001286216.1	gamma carbonic anhydrase family protein	-
IQS24_RS19620 (IQS24_19625)	yrdB	4059908..4060165 (-)	258	WP_001070563.1	DUF1488 domain-containing protein	-
IQS24_RS19625 (IQS24_19630)	aroE	4060162..4060980 (-)	819	WP_000451243.1	shikimate dehydrogenase	-
IQS24_RS19630 (IQS24_19635)	tsaC	4060985..4061557 (-)	573	WP_001301412.1	L-threonylcarbamoyladenylate synthase type 1 TsaC	-
IQS24_RS19635 (IQS24_19640)	yrdD	4061562..4062104 (-)	543	WP_001129722.1	type I DNA topoisomerase	-
IQS24_RS19640 (IQS24_19645)	smg	4062133..4062606 (-)	474	WP_000460680.1	DUF494 family protein Smg	-
IQS24_RS19645 (IQS24_19650)	dprA	4062578..4063702 (-)	1125	WP_205595500.1	DNA-protecting protein DprA	Machinery gene
IQS24_RS19650 (IQS24_19655)	def	4063832..4064341 (+)	510	WP_000114984.1	peptide deformylase	-
IQS24_RS19655 (IQS24_19660)	fmt	4064356..4065303 (+)	948	WP_000004473.1	methionyl-tRNA formyltransferase	-
IQS24_RS19660 (IQS24_19665)	rsmB	4065349..4066638 (+)	1290	WP_000744778.1	16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB	-
IQS24_RS19665 (IQS24_19670)	trkA	4066660..4068036 (+)	1377	WP_000691382.1	Trk system potassium transporter TrkA	-
IQS24_RS19670 (IQS24_19675)	mscL	4068166..4068576 (+)	411	WP_000022442.1	large-conductance mechanosensitive channel protein MscL	-

Sequence

Protein

Download Length: 374 a.a. Molecular weight: 40968.94 Da Isoelectric Point: 6.3122

                                >NTDB_id=439760 IQS24_RS19645 WP_205595500.1 4062578..4063702(-) (dprA) [Escherichia coli strain EM18-18-42]

MVDTEIWLRLMSISSLYGDDMVRIAHWVAKQSHIDAVVLQQTGLTLRQAQRFLSFPRKSIESSLCWLEQPNHHLIPADSE

FYPPQLLATTDYPGALFVEGELHALHSFQLAVVGSRAHSWYGERWGRLFCETLATRGVTITSGLARGIDGIAHKAALQVN

GVSIAVLGNGLNTIHPRRHARLAASLLEQGGALVSEFPLDVPPLAYNFPRRNRIISGLSKGVLVVEAALRSGSLVTARCA

LEQGREVFALPGPIGNPGSEGPHWLIKQGAILVTEPEEILENLQFGLHWLPDAPENSFYSPDQQDVALPFPELLANVGDE

VTPVDVVAERAGQPVPEVVTQLLELELAGWIAAVPGGYVRLRRACHVRRTNVFV

Nucleotide

Download Length: 1125 bp

                                >NTDB_id=439760 IQS24_RS19645 WP_205595500.1 4062578..4063702(-) (dprA) [Escherichia coli strain EM18-18-42]

ATGGTCGATACAGAAATTTGGCTGCGTTTAATGAGTATCAGCAGCTTGTACGGCGATGATATGGTCCGTATCGCTCACTG

GGTGGCAAAACAGTCGCATATTGATGCGGTTGTATTGCAGCAAACAGGGCTTACATTGCGGCAGGCACAACGCTTTCTTT

CATTTCCACGAAAGAGTATCGAAAGCTCACTTTGTTGGTTGGAGCAACCCAACCATCATTTAATTCCTGCGGACAGCGAA

TTTTATCCTCCTCAACTTCTGGCGACGACAGATTACCCCGGCGCACTGTTTGTTGAAGGAGAACTGCACGCGCTGCATTC

ATTTCAGCTTGCCGTAGTGGGGAGTCGGGCGCATTCATGGTATGGCGAGCGATGGGGACGATTATTTTGCGAAACTCTGG

CGACGCGTGGAGTGACAATTACGAGTGGACTGGCGCGTGGAATCGATGGTATAGCGCATAAAGCAGCCTTACAGGTAAAT

GGCGTCAGCATTGCTGTATTGGGGAATGGACTTAATACCATTCATCCCCGCCGTCATGCCCGACTGGCTGCCAGTCTGCT

TGAACAGGGGGGCGCTCTCGTCTCGGAATTTCCCCTCGATGTTCCACCCCTTGCTTACAATTTCCCACGAAGAAATCGCA

TTATCAGTGGTCTAAGTAAAGGTGTACTGGTGGTGGAAGCGGCTTTGCGTAGTGGTTCGCTGGTGACAGCACGTTGTGCG

CTTGAGCAGGGGCGAGAAGTTTTTGCCTTGCCAGGTCCAATAGGGAATCCGGGAAGCGAAGGGCCTCACTGGTTAATAAA

ACAAGGTGCGATTCTTGTGACGGAACCGGAAGAAATTCTGGAAAACTTGCAATTTGGATTGCACTGGTTGCCAGACGCCC

CTGAAAATTCATTTTATTCACCAGATCAGCAAGACGTGGCATTGCCATTTCCTGAGCTTCTGGCTAACGTAGGAGATGAG

GTAACACCTGTTGACGTCGTCGCTGAACGTGCCGGCCAACCTGTGCCAGAGGTAGTTACTCAACTACTCGAACTGGAGTT

AGCAGGATGGATCGCAGCTGTACCCGGCGGCTATGTCCGATTGAGGAGGGCATGCCATGTTCGACGTACTAATGTATTTG

TTTGA

Domains

Predicted by InterProScan.

DNA recombination-mediator protein A (DNA_processg_A)

(67-274)

DprA winged helix domain (WHD_DprA)

(312-357)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
dprA	Vibrio campbellii strain DS40M4	48.238	98.663	0.476
dprA	Vibrio cholerae O1 biovar El Tor strain E7946	49.355	82.888	0.409
dprA	Vibrio cholerae strain A1552	49.355	82.888	0.409
dprA	Haemophilus influenzae Rd KW20	45.104	90.107	0.406
dprA	Glaesserella parasuis strain SC1401	44.807	90.107	0.404
dprA	Legionella pneumophila strain ERS1305867	44.242	88.235	0.39

Detailed information NTG0439760