Detailed information NTG0439681

Bioinformatically predicted

Overview

• Name: comB10
• Type: Machinery gene
• Locus tag: HG574_RS00235
• Genome accession: NZ_CP051541
• Coordinates: 41828..42958 (+)
• Length: 376 a.a.
• NCBI ID: WP_202144861.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain LIM-001
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 36828..47958

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HG574_RS00200 (HG574_00200)	panD	37264..37617 (+)	354	WP_097689164.1	aspartate 1-decarboxylase	-
HG574_RS00205 (HG574_00205)	-	37620..37922 (+)	303	WP_000347926.1	YbaB/EbfC family nucleoid-associated protein	-
HG574_RS00210 (HG574_00210)	-	37922..38917 (+)	996	WP_202145298.1	PDZ domain-containing protein	-
HG574_RS00215 (HG574_00215)	comB6	38925..39980 (+)	1056	WP_202145297.1	P-type conjugative transfer protein TrbL	Machinery gene
HG574_RS00220 (HG574_00220)	comB7	39996..40109 (+)	114	WP_001217873.1	hypothetical protein	Machinery gene
HG574_RS00225 (HG574_00225)	comB8	40106..40849 (+)	744	WP_202144859.1	virB8 family protein	Machinery gene
HG574_RS00230 (HG574_00230)	comB9	40849..41835 (+)	987	WP_202144860.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
HG574_RS00235 (HG574_00235)	comB10	41828..42958 (+)	1131	WP_202144861.1	DNA type IV secretion system protein ComB10	Machinery gene
HG574_RS00240 (HG574_00240)	-	43029..44456 (+)	1428	WP_202144862.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-
HG574_RS00245 (HG574_00245)	gmd	44456..45601 (+)	1146	Protein_42	GDP-mannose 4,6-dehydratase	-
HG574_RS00250 (HG574_00250)	-	45594..46526 (+)	933	WP_001002505.1	GDP-L-fucose synthase	-
HG574_RS07765	-	46876..47273 (-)	398	Protein_44	hypothetical protein	-

Sequence

Protein

• Length: 376 a.a.
• Molecular weight: 42001.47 Da
• Isoelectric Point: 9.8254

>NTDB_id=439681 HG574_RS00235 WP_202144861.1 41828..42958(+) (comB10) [Helicobacter pylori strain LIM-001]
MNKWLKGAIVFVGGFATITSISLIYHQKPKAPLNNQPSLLNDDEVKYPLQDYTFTQNPQPTNTENSKDATIKALQEQLKA
ALKALNSKEMNYSKEETFKSPPMDPKTTPPKKDFSPKQLDLLAARITPFKQSPKNYEENLIFPVDNPNGIDGFTNLKEKD
TATNENKLLRTITADKMIPAFLITPISSQIAGKVIAQVESDIFAHMGKAVLIPKGSKVIGYYSNNNKMGEYRLDIVWSRI
ITPHGINIMLTNAKGADIKGYNGLVGELIERNFQRYGVPLLLSTLTNGLLIGITSALNNRGNKEEVTNFFGDYLLLQLMR
QSGMGINQVVNQILRDKSKIAPIVVIREGSRVFISPNTDIFFPIPRENEVIAEFLK

Nucleotide

• Length: 1131 bp

>NTDB_id=439681 HG574_RS00235 WP_202144861.1 41828..42958(+) (comB10) [Helicobacter pylori strain LIM-001]
ATGAATAAGTGGCTTAAGGGGGCGATTGTTTTTGTAGGGGGTTTTGCAACGATTACAAGTATTTCTTTAATCTACCACCA
AAAGCCAAAAGCCCCCTTAAATAACCAGCCTAGCCTTTTAAATGACGATGAGGTGAAATACCCCTTACAAGACTACACCT
TCACTCAAAACCCACAGCCAACCAACACAGAAAACTCCAAAGACGCTACCATCAAAGCCTTACAAGAACAGCTCAAAGCC
GCTTTAAAAGCCCTAAACTCCAAAGAAATGAACTATTCCAAAGAAGAAACTTTTAAGAGCCCTCCCATGGATCCAAAAAC
AACCCCCCCTAAAAAAGATTTTTCTCCAAAACAATTAGATTTACTGGCCGCTCGCATCACCCCTTTCAAACAAAGCCCTA
AAAATTACGAAGAAAACCTGATTTTCCCTGTGGATAACCCTAATGGCATTGATGGTTTCACTAACCTTAAAGAAAAAGAC
ACCGCCACTAATGAAAACAAGCTTTTACGCACCATTACAGCCGATAAAATGATACCCGCTTTTTTGATCACGCCCATTTC
TAGCCAGATCGCTGGTAAAGTGATTGCACAAGTGGAAAGCGATATTTTCGCTCACATGGGCAAAGCTGTTTTAATCCCCA
AAGGCTCTAAAGTCATAGGCTATTACAGCAACAATAACAAAATGGGCGAATACCGCTTGGATATTGTATGGAGTCGAATC
ATCACTCCCCATGGCATTAATATCATGCTCACTAACGCTAAAGGGGCGGACATTAAAGGCTATAACGGCTTGGTGGGGGA
ATTGATTGAAAGGAATTTCCAACGCTATGGCGTGCCGTTACTGCTTTCTACGCTCACTAACGGCCTATTGATTGGGATCA
CTTCGGCTTTAAACAACAGAGGCAATAAAGAAGAGGTGACTAATTTCTTTGGGGATTACCTTTTATTGCAATTGATGAGG
CAAAGCGGCATGGGGATCAATCAAGTCGTCAATCAAATTTTAAGAGACAAGAGCAAGATCGCTCCCATTGTGGTGATTAG
AGAGGGGAGTAGGGTATTCATTTCGCCCAATACTGACATCTTCTTCCCTATACCCAGAGAGAATGAAGTCATCGCTGAGT
TTTTGAAGTGA

Domains

Predicted by InterproScan.

• Bacterial conjugation TrbI-like protein (TrbI) (171-362)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB10	Helicobacter pylori P1	96.543	100	0.965