Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB9   Type   Machinery gene
Locus tag   HG574_RS00230 Genome accession   NZ_CP051541
Coordinates   40849..41835 (+) Length   328 a.a.
NCBI ID   WP_202144860.1    Uniprot ID   -
Organism   Helicobacter pylori strain LIM-001     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 35849..46835
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HG574_RS00200 (HG574_00200) panD 37264..37617 (+) 354 WP_097689164.1 aspartate 1-decarboxylase -
  HG574_RS00205 (HG574_00205) - 37620..37922 (+) 303 WP_000347926.1 YbaB/EbfC family nucleoid-associated protein -
  HG574_RS00210 (HG574_00210) - 37922..38917 (+) 996 WP_202145298.1 PDZ domain-containing protein -
  HG574_RS00215 (HG574_00215) comB6 38925..39980 (+) 1056 WP_202145297.1 P-type conjugative transfer protein TrbL Machinery gene
  HG574_RS00220 (HG574_00220) comB7 39996..40109 (+) 114 WP_001217873.1 hypothetical protein Machinery gene
  HG574_RS00225 (HG574_00225) comB8 40106..40849 (+) 744 WP_202144859.1 virB8 family protein Machinery gene
  HG574_RS00230 (HG574_00230) comB9 40849..41835 (+) 987 WP_202144860.1 TrbG/VirB9 family P-type conjugative transfer protein Machinery gene
  HG574_RS00235 (HG574_00235) comB10 41828..42958 (+) 1131 WP_202144861.1 DNA type IV secretion system protein ComB10 Machinery gene
  HG574_RS00240 (HG574_00240) - 43029..44456 (+) 1428 WP_202144862.1 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase -
  HG574_RS00245 (HG574_00245) gmd 44456..45601 (+) 1146 Protein_42 GDP-mannose 4,6-dehydratase -
  HG574_RS00250 (HG574_00250) - 45594..46526 (+) 933 WP_001002505.1 GDP-L-fucose synthase -

Sequence

Protein


Download         Length: 328 a.a.        Molecular weight: 37918.62 Da        Isoelectric Point: 9.5484

>NTDB_id=439680 HG574_RS00230 WP_202144860.1 40849..41835(+) (comB9) [Helicobacter pylori strain LIM-001]
MRKVLYALMGFLLAFSALRADDFLEEANETAPANLNHPMQDLNAIQGSFFDKNRSKMSNTLNIDYFQGQTYKIRLRYAMA
TLLFFSKPISDFVLGDKVGFDAKILESNDRILLIKPLQIGVDSNISVIDSDGKIFSFYVFSTTFTSSKHPNLQVFIEDKN
YYTNAFIKPQKENQENMAENAPKDAQKNNKPLKEEKEETKEKEEETITIGDNTNAMKIVKKDIQKGYKALKSSQRKWYCL
WACSKKSKLSLMPKEIFNDKQFTYFKFDKRLALSKFPVIYKVVDGYDNPVNTRIVGDYIIAEDVSTKWTLRLGKDYLCIR
FVKKAKDE

Nucleotide


Download         Length: 987 bp        

>NTDB_id=439680 HG574_RS00230 WP_202144860.1 40849..41835(+) (comB9) [Helicobacter pylori strain LIM-001]
ATGCGTAAGGTTTTATATGCCCTCATGGGCTTTTTGTTGGCTTTTAGCGCTTTAAGAGCCGATGATTTTTTAGAAGAAGC
TAACGAAACAGCCCCGGCGAATTTAAACCACCCCATGCAGGATTTAAACGCCATTCAAGGGAGCTTTTTTGATAAAAACC
GCTCCAAAATGTCCAACACTTTGAACATTGATTATTTTCAAGGGCAAACCTATAAAATCCGCTTGCGTTATGCGATGGCG
ACCTTATTGTTTTTTTCAAAACCCATTAGCGATTTTGTTTTGGGGGACAAGGTGGGCTTTGATGCGAAAATCTTAGAGAG
CAACGATCGCATTTTACTCATCAAACCTTTACAAATCGGCGTGGATTCCAATATCAGCGTGATTGATAGCGATGGTAAGA
TTTTTTCTTTCTATGTGTTTTCTACCACTTTCACCAGCTCCAAACACCCTAATTTACAGGTTTTCATAGAAGATAAAAAC
TACTACACTAACGCTTTTATCAAGCCCCAAAAAGAAAATCAAGAAAATATGGCTGAAAATGCCCCTAAAGATGCCCAAAA
AAATAATAAGCCCCTAAAAGAAGAAAAAGAAGAAACCAAAGAAAAAGAAGAAGAGACTATAACTATTGGCGATAACACTA
ATGCGATGAAAATCGTTAAAAAAGACATTCAAAAAGGCTATAAGGCTTTAAAAAGCTCTCAAAGGAAATGGTATTGTTTA
TGGGCTTGTTCTAAAAAATCCAAACTTTCTTTGATGCCTAAAGAAATCTTTAACGACAAACAATTCACTTATTTCAAATT
TGACAAAAGATTAGCGCTCTCTAAATTCCCGGTGATTTATAAAGTCGTTGATGGCTATGATAACCCGGTGAATACAAGGA
TTGTGGGCGATTACATTATCGCTGAAGACGTTTCTACTAAATGGACTTTAAGGCTGGGTAAGGACTATTTGTGCATCCGT
TTTGTCAAAAAGGCTAAAGATGAATAA

Domains

Predicted by InterproScan.

Conjugal transfer protein (CagX)

(62-319)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB9 Helicobacter pylori P1

94.207

100

0.942