Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB8   Type   Machinery gene
Locus tag   HG574_RS00225 Genome accession   NZ_CP051541
Coordinates   40106..40849 (+) Length   247 a.a.
NCBI ID   WP_202144859.1    Uniprot ID   -
Organism   Helicobacter pylori strain LIM-001     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 35106..45849
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HG574_RS00200 (HG574_00200) panD 37264..37617 (+) 354 WP_097689164.1 aspartate 1-decarboxylase -
  HG574_RS00205 (HG574_00205) - 37620..37922 (+) 303 WP_000347926.1 YbaB/EbfC family nucleoid-associated protein -
  HG574_RS00210 (HG574_00210) - 37922..38917 (+) 996 WP_202145298.1 PDZ domain-containing protein -
  HG574_RS00215 (HG574_00215) comB6 38925..39980 (+) 1056 WP_202145297.1 P-type conjugative transfer protein TrbL Machinery gene
  HG574_RS00220 (HG574_00220) comB7 39996..40109 (+) 114 WP_001217873.1 hypothetical protein Machinery gene
  HG574_RS00225 (HG574_00225) comB8 40106..40849 (+) 744 WP_202144859.1 virB8 family protein Machinery gene
  HG574_RS00230 (HG574_00230) comB9 40849..41835 (+) 987 WP_202144860.1 TrbG/VirB9 family P-type conjugative transfer protein Machinery gene
  HG574_RS00235 (HG574_00235) comB10 41828..42958 (+) 1131 WP_202144861.1 DNA type IV secretion system protein ComB10 Machinery gene
  HG574_RS00240 (HG574_00240) - 43029..44456 (+) 1428 WP_202144862.1 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase -
  HG574_RS00245 (HG574_00245) gmd 44456..45601 (+) 1146 Protein_42 GDP-mannose 4,6-dehydratase -

Sequence

Protein


Download         Length: 247 a.a.        Molecular weight: 28707.97 Da        Isoelectric Point: 8.9604

>NTDB_id=439679 HG574_RS00225 WP_202144859.1 40106..40849(+) (comB8) [Helicobacter pylori strain LIM-001]
MREKPFNSEQLIYLEELLSHQEKHLENKLSGFSVSDLDMQSVFRLERNRLKIAYKLLGLMSFIALILAIVLISLLPLQKT
EHHFVDFLNQDKHYAIIQRADKSISSNEALARSLIGAYVLNRESINRIDDKSRYELVRLQSSSKVWQRFEDLIKAQNSIY
AQSHLEREVHIVNIAIYQQDNNPIASVSIAAKLLNENKLVYEKRYKIVLSYLFDTPDFDYASMPKNPTGFKITRYSITEI
VPTNRGD

Nucleotide


Download         Length: 744 bp        

>NTDB_id=439679 HG574_RS00225 WP_202144859.1 40106..40849(+) (comB8) [Helicobacter pylori strain LIM-001]
ATGAGAGAAAAGCCTTTCAATAGCGAGCAATTGATCTATTTAGAAGAGCTTTTAAGCCACCAAGAAAAGCATTTAGAAAA
CAAGCTTTCTGGTTTTTCGGTAAGTGATTTGGACATGCAAAGCGTGTTCAGATTGGAGAGAAACCGCTTGAAAATCGCTT
ACAAGCTCTTAGGCTTGATGAGTTTTATCGCTCTTATTTTAGCGATCGTGTTAATCAGTCTTCTACCCTTACAAAAAACC
GAACACCATTTCGTGGATTTTTTAAACCAGGACAAGCATTACGCCATTATCCAAAGAGCGGATAAAAGCATTTCTAGTAA
TGAAGCGTTGGCTCGTTCGCTCATTGGGGCGTATGTGTTAAACCGAGAGAGCATTAATCGCATTGACGATAAATCCCGCT
ATGAACTGGTGCGCTTGCAAAGCAGCTCTAAAGTGTGGCAACGCTTTGAAGATTTGATCAAAGCCCAAAACAGCATTTAT
GCGCAAAGCCATTTAGAAAGAGAAGTCCATATCGTCAATATTGCGATCTATCAGCAAGACAATAACCCCATTGCGAGCGT
GTCCATTGCGGCTAAACTTTTGAATGAAAACAAGCTCGTGTATGAAAAGCGTTATAAGATCGTATTGAGTTATCTGTTTG
ACACCCCGGATTTTGATTACGCTTCCATGCCTAAAAACCCTACCGGCTTTAAAATCACTCGCTACAGCATCACTGAAATC
GTGCCGACTAATAGGGGCGATTGA

Domains

Predicted by InterproScan.

VirB8 protein (VirB8)

(38-239)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB8 Helicobacter pylori P1

98.785

100

0.988