Detailed information NTG0439677

Bioinformatically predicted

Overview

• Name: comB6
• Type: Machinery gene
• Locus tag: HG574_RS00215
• Genome accession: NZ_CP051541
• Coordinates: 38925..39980 (+)
• Length: 351 a.a.
• NCBI ID: WP_202145297.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain LIM-001
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 33925..44980

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HG574_RS00185 (HG574_00185)	-	34325..34738 (+)	414	WP_001023005.1	universal stress protein	-
HG574_RS00190 (HG574_00190)	-	34774..35049 (+)	276	WP_000784903.1	ATP-dependent Clp protease adaptor ClpS	-
HG574_RS00195 (HG574_00195)	-	35049..37274 (+)	2226	WP_202144858.1	ATP-dependent Clp protease ATP-binding subunit	-
HG574_RS00200 (HG574_00200)	panD	37264..37617 (+)	354	WP_097689164.1	aspartate 1-decarboxylase	-
HG574_RS00205 (HG574_00205)	-	37620..37922 (+)	303	WP_000347926.1	YbaB/EbfC family nucleoid-associated protein	-
HG574_RS00210 (HG574_00210)	-	37922..38917 (+)	996	WP_202145298.1	PDZ domain-containing protein	-
HG574_RS00215 (HG574_00215)	comB6	38925..39980 (+)	1056	WP_202145297.1	P-type conjugative transfer protein TrbL	Machinery gene
HG574_RS00220 (HG574_00220)	comB7	39996..40109 (+)	114	WP_001217873.1	hypothetical protein	Machinery gene
HG574_RS00225 (HG574_00225)	comB8	40106..40849 (+)	744	WP_202144859.1	virB8 family protein	Machinery gene
HG574_RS00230 (HG574_00230)	comB9	40849..41835 (+)	987	WP_202144860.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
HG574_RS00235 (HG574_00235)	comB10	41828..42958 (+)	1131	WP_202144861.1	DNA type IV secretion system protein ComB10	Machinery gene
HG574_RS00240 (HG574_00240)	-	43029..44456 (+)	1428	WP_202144862.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-

Sequence

Protein

• Length: 351 a.a.
• Molecular weight: 39708.65 Da
• Isoelectric Point: 9.0413

>NTDB_id=439677 HG574_RS00215 WP_202145297.1 38925..39980(+) (comB6) [Helicobacter pylori strain LIM-001]
MKNDAYEIILSWFITPLTAILGRFAEFFLYTLHAQLVFNSVVALAFMLFAYRSLKEQNFFSASALTEALLFVGFFALFNY
ALKNPSRFYELFQNAIFIAPNMITQSLSQSLSNFSNHALSLDFIFNHGFYALSFISDLSHNEMSVWLFLSILQALFLSVL
FAIIILVYLEVHVWCSLGVLFLAFGFFKTWRSVVITCLKKCFALGFYKPFLLLVGFLNVSVTKALIDAHMQEKQDLSLLL
VVALFLCCVFIIGVPFFINALFRVQNSLKETYKLATNLSANLTQSALQSLQYITTPPAPSSVSTSTSGSVSKEKETHSPT
FKVETTQLDVKIPNFKQKKVKKDTINTKNEI

Nucleotide

• Length: 1056 bp

>NTDB_id=439677 HG574_RS00215 WP_202145297.1 38925..39980(+) (comB6) [Helicobacter pylori strain LIM-001]
ATGAAAAATGACGCTTATGAAATCATTCTTTCTTGGTTTATCACGCCTCTCACGGCGATTTTAGGGCGTTTCGCTGAATT
TTTCCTCTACACCTTGCATGCGCAATTGGTGTTTAATAGCGTGGTCGCTTTGGCGTTCATGCTCTTTGCTTATAGGAGTT
TGAAAGAACAGAATTTCTTCAGCGCTAGCGCGCTAACAGAAGCGTTATTATTTGTGGGGTTTTTTGCACTGTTTAACTAC
GCTTTGAAAAACCCTTCGCGCTTTTATGAATTGTTTCAAAACGCTATTTTTATTGCGCCTAACATGATCACTCAAAGCCT
CTCTCAAAGCTTGAGTAACTTTTCTAACCACGCGCTTTCTTTAGATTTTATCTTTAATCATGGTTTTTATGCCCTTAGTT
TCATCAGCGATTTGAGCCATAATGAAATGTCCGTGTGGCTTTTTTTAAGCATCTTGCAAGCGCTTTTTTTGAGCGTGCTG
TTTGCGATCATCATTTTAGTGTATTTGGAAGTGCATGTGTGGTGCTCTTTAGGGGTGTTGTTTTTAGCGTTTGGGTTTTT
CAAAACCTGGAGGAGCGTTGTAATCACATGCCTTAAAAAATGCTTCGCTCTTGGGTTTTACAAGCCTTTTTTGTTGTTGG
TGGGGTTTTTGAACGTGTCGGTTACTAAGGCTTTAATAGACGCTCATATGCAAGAAAAACAAGACTTAAGCCTTTTATTG
GTGGTGGCGTTATTTTTGTGTTGCGTCTTTATCATAGGCGTGCCTTTTTTCATCAACGCTTTGTTTAGGGTGCAAAACAG
TCTCAAAGAAACTTACAAACTCGCCACCAATTTGAGCGCTAACCTCACTCAAAGCGCTTTGCAATCTTTACAATATATCA
CGACCCCACCCGCTCCCTCTAGCGTTTCTACTTCTACAAGCGGTAGCGTTTCTAAAGAAAAAGAAACGCATTCCCCCACA
TTTAAGGTAGAAACCACTCAATTAGATGTAAAAATCCCAAATTTCAAGCAAAAAAAGGTTAAAAAGGATACAATAAATAC
AAAAAATGAAATTTAA

Domains

Predicted by InterproScan.

• TrbL/VirB6 plasmid conjugal transfer protein (TrbL) (44-254)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB6	Helicobacter pylori 26695	95.442	100	0.954