Detailed information
Bioinformatically predicted
Overview
| Name | comB10 | Type | Machinery gene |
| Locus tag | HG581_RS00215 | Genome accession | NZ_CP051535 |
| Coordinates | 39223..40353 (+) | Length | 376 a.a. |
| NCBI ID | WP_202138055.1 | Uniprot ID | - |
| Organism | Helicobacter pylori strain LIM-008 | ||
| Function | transformation-associated type IV transport system (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 34223..45353
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HG581_RS00180 (HG581_00180) | panD | 34674..35027 (+) | 354 | WP_024368743.1 | aspartate 1-decarboxylase | - |
| HG581_RS00185 (HG581_00185) | - | 35030..35332 (+) | 303 | WP_202138052.1 | YbaB/EbfC family nucleoid-associated protein | - |
| HG581_RS00190 (HG581_00190) | - | 35332..36327 (+) | 996 | WP_202138491.1 | PDZ domain-containing protein | - |
| HG581_RS00195 (HG581_00195) | comB6 | 36335..37390 (+) | 1056 | WP_202138490.1 | P-type conjugative transfer protein TrbL | Machinery gene |
| HG581_RS00200 (HG581_00200) | comB7 | 37406..37519 (+) | 114 | WP_001217873.1 | hypothetical protein | Machinery gene |
| HG581_RS00205 (HG581_00205) | comB8 | 37516..38253 (+) | 738 | WP_202138053.1 | virB8 family protein | Machinery gene |
| HG581_RS00210 (HG581_00210) | comB9 | 38253..39230 (+) | 978 | WP_202138054.1 | TrbG/VirB9 family P-type conjugative transfer protein | Machinery gene |
| HG581_RS00215 (HG581_00215) | comB10 | 39223..40353 (+) | 1131 | WP_202138055.1 | DNA type IV secretion system protein ComB10 | Machinery gene |
| HG581_RS00220 (HG581_00220) | - | 40424..41836 (+) | 1413 | WP_202138056.1 | mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase | - |
| HG581_RS00225 (HG581_00225) | gmd | 41878..43023 (+) | 1146 | WP_202138057.1 | GDP-mannose 4,6-dehydratase | - |
| HG581_RS00230 (HG581_00230) | - | 43016..43948 (+) | 933 | WP_202138058.1 | GDP-L-fucose synthase | - |
| HG581_RS00235 (HG581_00235) | - | 43999..44142 (-) | 144 | WP_164863077.1 | hypothetical protein | - |
| HG581_RS00240 (HG581_00240) | hypE | 44262..45260 (-) | 999 | WP_202138059.1 | hydrogenase expression/formation protein HypE | - |
Sequence
Protein
Download Length: 376 a.a. Molecular weight: 41928.41 Da Isoelectric Point: 9.9021
>NTDB_id=439576 HG581_RS00215 WP_202138055.1 39223..40353(+) (comB10) [Helicobacter pylori strain LIM-008]
MNKWIKGAVVFIGGFATITTISLVYHQKPKAPLNNQQNLLNDDEVKYPLQDYTFTQNPQPTNTDSSKDATIKALQEQLKA
ALKALNSKEMNYSKEETFKSPPIDPKTTPPKKDFSLKQLDLLAARITPFKQSPKNYEENLIFPVDNPNGIDGFTNLKEKD
IATNENKLLRTITADKMIPAFLITPISSQIAGKVIAQVESDIFAHMGKAVLIPKGSKVIGYYSNNNKMGEYRLDIVWSRI
ITPHGINIMLTNAKGADIKGYNGLVGELIERNFQRYGVPLLLSTLTNGLLIGITSALNNRGNKEGATNFFGDYLLLQLMR
QSGMGINQVVNQILRDKSKIAPIVVIREGSRVFISPNTDIFFPIPRENEVIAEFLK
MNKWIKGAVVFIGGFATITTISLVYHQKPKAPLNNQQNLLNDDEVKYPLQDYTFTQNPQPTNTDSSKDATIKALQEQLKA
ALKALNSKEMNYSKEETFKSPPIDPKTTPPKKDFSLKQLDLLAARITPFKQSPKNYEENLIFPVDNPNGIDGFTNLKEKD
IATNENKLLRTITADKMIPAFLITPISSQIAGKVIAQVESDIFAHMGKAVLIPKGSKVIGYYSNNNKMGEYRLDIVWSRI
ITPHGINIMLTNAKGADIKGYNGLVGELIERNFQRYGVPLLLSTLTNGLLIGITSALNNRGNKEGATNFFGDYLLLQLMR
QSGMGINQVVNQILRDKSKIAPIVVIREGSRVFISPNTDIFFPIPRENEVIAEFLK
Nucleotide
Download Length: 1131 bp
>NTDB_id=439576 HG581_RS00215 WP_202138055.1 39223..40353(+) (comB10) [Helicobacter pylori strain LIM-008]
GTGAATAAGTGGATTAAAGGGGCGGTTGTTTTTATAGGGGGTTTTGCAACGATTACAACAATTTCTTTAGTCTATCATCA
AAAGCCAAAAGCCCCCTTAAACAACCAACAAAACCTTTTGAATGACGATGAGGTGAAATACCCCTTACAAGACTACACCT
TCACTCAAAACCCACAGCCAACTAACACAGACAGCTCTAAAGACGCCACCATCAAAGCCTTACAAGAACAGCTCAAAGCC
GCTTTAAAAGCCCTAAACTCCAAAGAAATGAATTATTCCAAAGAAGAAACTTTTAAGAGCCCTCCCATAGATCCAAAAAC
AACCCCCCCTAAAAAAGATTTTTCTTTAAAGCAATTAGATTTACTAGCCGCTCGCATCACCCCTTTCAAACAAAGCCCTA
AAAATTACGAAGAAAACCTGATTTTCCCTGTGGATAACCCTAATGGCATTGATGGTTTCACTAACCTTAAAGAAAAAGAC
ATTGCCACTAATGAAAACAAGCTTCTACGCACCATTACGGCTGACAAAATGATACCCGCCTTTTTGATCACGCCCATTTC
TAGCCAGATCGCTGGTAAAGTCATCGCGCAAGTGGAGAGCGATATTTTCGCTCACATGGGCAAAGCCGTCTTAATCCCCA
AAGGCTCTAAAGTTATAGGCTATTACAGCAACAATAACAAAATGGGCGAATACCGCTTGGATATTGTATGGAGCCGCATC
ATCACTCCCCATGGCATTAATATCATGCTCACTAACGCTAAAGGGGCGGACATTAAAGGCTATAACGGATTAGTGGGGGA
ATTGATTGAAAGGAATTTCCAGCGCTATGGCGTGCCGTTACTGCTTTCTACTCTCACTAACGGCTTGTTGATTGGAATCA
CTTCGGCTTTAAACAACAGGGGCAATAAAGAAGGAGCCACCAATTTCTTTGGGGATTATCTTTTATTGCAATTGATGAGG
CAAAGCGGTATGGGGATCAATCAAGTGGTCAATCAAATTTTAAGAGACAAGAGCAAAATCGCTCCCATTGTGGTGATTAG
AGAGGGGAGTAGGGTATTCATTTCGCCCAATACTGACATCTTTTTCCCTATACCCAGAGAGAATGAAGTCATCGCTGAGT
TTTTGAAGTGA
GTGAATAAGTGGATTAAAGGGGCGGTTGTTTTTATAGGGGGTTTTGCAACGATTACAACAATTTCTTTAGTCTATCATCA
AAAGCCAAAAGCCCCCTTAAACAACCAACAAAACCTTTTGAATGACGATGAGGTGAAATACCCCTTACAAGACTACACCT
TCACTCAAAACCCACAGCCAACTAACACAGACAGCTCTAAAGACGCCACCATCAAAGCCTTACAAGAACAGCTCAAAGCC
GCTTTAAAAGCCCTAAACTCCAAAGAAATGAATTATTCCAAAGAAGAAACTTTTAAGAGCCCTCCCATAGATCCAAAAAC
AACCCCCCCTAAAAAAGATTTTTCTTTAAAGCAATTAGATTTACTAGCCGCTCGCATCACCCCTTTCAAACAAAGCCCTA
AAAATTACGAAGAAAACCTGATTTTCCCTGTGGATAACCCTAATGGCATTGATGGTTTCACTAACCTTAAAGAAAAAGAC
ATTGCCACTAATGAAAACAAGCTTCTACGCACCATTACGGCTGACAAAATGATACCCGCCTTTTTGATCACGCCCATTTC
TAGCCAGATCGCTGGTAAAGTCATCGCGCAAGTGGAGAGCGATATTTTCGCTCACATGGGCAAAGCCGTCTTAATCCCCA
AAGGCTCTAAAGTTATAGGCTATTACAGCAACAATAACAAAATGGGCGAATACCGCTTGGATATTGTATGGAGCCGCATC
ATCACTCCCCATGGCATTAATATCATGCTCACTAACGCTAAAGGGGCGGACATTAAAGGCTATAACGGATTAGTGGGGGA
ATTGATTGAAAGGAATTTCCAGCGCTATGGCGTGCCGTTACTGCTTTCTACTCTCACTAACGGCTTGTTGATTGGAATCA
CTTCGGCTTTAAACAACAGGGGCAATAAAGAAGGAGCCACCAATTTCTTTGGGGATTATCTTTTATTGCAATTGATGAGG
CAAAGCGGTATGGGGATCAATCAAGTGGTCAATCAAATTTTAAGAGACAAGAGCAAAATCGCTCCCATTGTGGTGATTAG
AGAGGGGAGTAGGGTATTCATTTCGCCCAATACTGACATCTTTTTCCCTATACCCAGAGAGAATGAAGTCATCGCTGAGT
TTTTGAAGTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comB10 | Helicobacter pylori P1 |
97.606 |
100 |
0.976 |