Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB8   Type   Machinery gene
Locus tag   HG581_RS00205 Genome accession   NZ_CP051535
Coordinates   37516..38253 (+) Length   245 a.a.
NCBI ID   WP_202138053.1    Uniprot ID   -
Organism   Helicobacter pylori strain LIM-008     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 32516..43253
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HG581_RS00180 (HG581_00180) panD 34674..35027 (+) 354 WP_024368743.1 aspartate 1-decarboxylase -
  HG581_RS00185 (HG581_00185) - 35030..35332 (+) 303 WP_202138052.1 YbaB/EbfC family nucleoid-associated protein -
  HG581_RS00190 (HG581_00190) - 35332..36327 (+) 996 WP_202138491.1 PDZ domain-containing protein -
  HG581_RS00195 (HG581_00195) comB6 36335..37390 (+) 1056 WP_202138490.1 P-type conjugative transfer protein TrbL Machinery gene
  HG581_RS00200 (HG581_00200) comB7 37406..37519 (+) 114 WP_001217873.1 hypothetical protein Machinery gene
  HG581_RS00205 (HG581_00205) comB8 37516..38253 (+) 738 WP_202138053.1 virB8 family protein Machinery gene
  HG581_RS00210 (HG581_00210) comB9 38253..39230 (+) 978 WP_202138054.1 TrbG/VirB9 family P-type conjugative transfer protein Machinery gene
  HG581_RS00215 (HG581_00215) comB10 39223..40353 (+) 1131 WP_202138055.1 DNA type IV secretion system protein ComB10 Machinery gene
  HG581_RS00220 (HG581_00220) - 40424..41836 (+) 1413 WP_202138056.1 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase -
  HG581_RS00225 (HG581_00225) gmd 41878..43023 (+) 1146 WP_202138057.1 GDP-mannose 4,6-dehydratase -

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 28483.67 Da        Isoelectric Point: 8.9604

>NTDB_id=439574 HG581_RS00205 WP_202138053.1 37516..38253(+) (comB8) [Helicobacter pylori strain LIM-008]
MREKPFNSEQLIYLEELLSHQEKHLENKLSGFSVSDLDMQSVFRLERNRLKIAYKLLGLMSFIALVLAIVLISVLPLQKT
EHHFVDFLNQDKHYAIIQRADKSISSNEALARSLIGAYVLNRESINRIDDKSRYELVRLQSSSKVWQRFEDLIKAQNSIY
AQSHLEREVHIVNIAIYQQDNNPIASVSIAAKLLNENKLVYEKRYKIVLSYLFDTPDFDYASMPKNPTGFKITRYSITEI
TNRGD

Nucleotide


Download         Length: 738 bp        

>NTDB_id=439574 HG581_RS00205 WP_202138053.1 37516..38253(+) (comB8) [Helicobacter pylori strain LIM-008]
ATGAGAGAAAAGCCTTTCAATAGCGAGCAATTGATCTATTTAGAAGAGCTTTTAAGCCACCAAGAAAAGCATTTAGAAAA
CAAGCTTTCTGGTTTTTCGGTAAGTGATTTGGACATGCAAAGCGTGTTTCGGTTGGAAAGAAACCGCTTGAAAATCGCTT
ACAAGCTCTTAGGCTTGATGAGTTTTATCGCTCTTGTTTTAGCGATCGTGTTAATCAGTGTTCTACCCTTACAAAAAACC
GAACACCATTTCGTGGATTTTTTAAACCAAGACAAGCATTACGCCATTATCCAAAGAGCGGATAAAAGCATTTCCAGTAA
TGAAGCGTTGGCTCGTTCGCTCATTGGGGCGTATGTGTTAAACCGAGAGAGTATTAATCGCATTGACGATAAATCGCGCT
ATGAATTGGTGCGCTTGCAAAGCAGTTCTAAAGTGTGGCAACGCTTTGAAGATTTGATTAAAGCCCAAAACAGCATCTAT
GCGCAAAGCCATTTAGAAAGAGAAGTCCATATCGTCAATATTGCGATCTATCAGCAAGACAATAACCCCATTGCGAGCGT
TTCCATTGCGGCTAAACTTTTGAATGAAAACAAGCTCGTGTATGAAAAGCGTTATAAAATCGTATTGAGCTATTTGTTTG
ACACCCCGGATTTTGATTACGCTTCCATGCCTAAAAACCCTACCGGCTTTAAAATCACTCGCTACAGCATCACTGAAATC
ACTAATAGGGGCGATTGA

Domains

Predicted by InterproScan.

VirB8 protein (VirB8)

(38-239)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB8 Helicobacter pylori P1

97.571

100

0.984