Detailed information NTG0439575

Bioinformatically predicted

Overview

• Name: comB9
• Type: Machinery gene
• Locus tag: HG581_RS00210
• Genome accession: NZ_CP051535
• Coordinates: 38253..39230 (+)
• Length: 325 a.a.
• NCBI ID: WP_202138054.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain LIM-008
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 33253..44230

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HG581_RS00180 (HG581_00180)	panD	34674..35027 (+)	354	WP_024368743.1	aspartate 1-decarboxylase	-
HG581_RS00185 (HG581_00185)	-	35030..35332 (+)	303	WP_202138052.1	YbaB/EbfC family nucleoid-associated protein	-
HG581_RS00190 (HG581_00190)	-	35332..36327 (+)	996	WP_202138491.1	PDZ domain-containing protein	-
HG581_RS00195 (HG581_00195)	comB6	36335..37390 (+)	1056	WP_202138490.1	P-type conjugative transfer protein TrbL	Machinery gene
HG581_RS00200 (HG581_00200)	comB7	37406..37519 (+)	114	WP_001217873.1	hypothetical protein	Machinery gene
HG581_RS00205 (HG581_00205)	comB8	37516..38253 (+)	738	WP_202138053.1	virB8 family protein	Machinery gene
HG581_RS00210 (HG581_00210)	comB9	38253..39230 (+)	978	WP_202138054.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
HG581_RS00215 (HG581_00215)	comB10	39223..40353 (+)	1131	WP_202138055.1	DNA type IV secretion system protein ComB10	Machinery gene
HG581_RS00220 (HG581_00220)	-	40424..41836 (+)	1413	WP_202138056.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-
HG581_RS00225 (HG581_00225)	gmd	41878..43023 (+)	1146	WP_202138057.1	GDP-mannose 4,6-dehydratase	-
HG581_RS00230 (HG581_00230)	-	43016..43948 (+)	933	WP_202138058.1	GDP-L-fucose synthase	-
HG581_RS00235 (HG581_00235)	-	43999..44142 (-)	144	WP_164863077.1	hypothetical protein	-

Sequence

Protein

• Length: 325 a.a.
• Molecular weight: 37523.15 Da
• Isoelectric Point: 9.6510

>NTDB_id=439575 HG581_RS00210 WP_202138054.1 38253..39230(+) (comB9) [Helicobacter pylori strain LIM-008]
MRKVLYALMGFLLAFSALRADDFLEEANETAPAHLNHPMQDLNAIQGSFFDKNRSKMSNTLNINYFQGQTYKIRLRYAMA
TLLFFSKPISDFVLGDKVGFDAKILESNDRILLIKPLQIGVDSNISVIDNEGKIFSFYVFSTTFTSSKHPNLQVFIEDKN
YYSNAFLKPQKENKENTLENAPTNNNKPLKAEKEETKEKEEETITIGDNTNAMKIVKKDIQKGYKALKSSQRKWYCLWAC
SKKSKLSLMPEEIFNDKQFTYFKFDKRLALSKFPVIYKVVDGYDNPVNTRIVGDYIIAEDVSAKWTLRLGKDYLCIRFVK
RSKGE

Nucleotide

• Length: 978 bp

>NTDB_id=439575 HG581_RS00210 WP_202138054.1 38253..39230(+) (comB9) [Helicobacter pylori strain LIM-008]
ATGCGTAAGGTTTTATATGCCCTCATGGGCTTTTTGTTGGCTTTTAGCGCTTTAAGAGCCGATGATTTTTTAGAAGAAGC
TAACGAAACAGCCCCGGCGCATTTAAACCACCCCATGCAGGATTTAAACGCCATTCAAGGGAGCTTTTTTGATAAAAACC
GCTCCAAAATGTCCAACACTTTGAACATTAATTACTTTCAAGGGCAAACCTATAAAATCCGCTTGCGTTATGCGATGGCG
ACCTTATTGTTTTTTTCAAAACCCATTAGCGATTTTGTTTTAGGGGATAAGGTGGGCTTTGACGCGAAAATCTTAGAAAG
TAACGATCGTATTTTACTCATCAAACCCTTACAAATCGGCGTGGATTCTAATATCAGCGTGATTGACAATGAGGGCAAGA
TTTTTTCTTTCTATGTGTTTTCTACCACTTTCACCAGTTCCAAACACCCTAATTTACAGGTTTTCATAGAAGATAAAAAT
TATTATTCTAACGCTTTTTTGAAGCCCCAAAAAGAAAATAAAGAAAATACCCTTGAAAACGCTCCCACAAACAACAACAA
ACCCTTAAAAGCAGAAAAAGAAGAAACCAAAGAAAAAGAAGAAGAGACTATAACTATTGGCGATAACACTAATGCGATGA
AAATCGTTAAAAAAGACATTCAAAAAGGCTATAAGGCTTTAAAAAGCTCTCAAAGGAAATGGTATTGTTTATGGGCTTGT
TCTAAAAAATCCAAACTCTCCTTAATGCCTGAAGAAATCTTTAACGACAAGCAATTCACTTATTTCAAATTTGACAAAAG
ATTAGCGCTCTCTAAATTCCCAGTGATTTATAAGGTCGTTGATGGCTATGATAACCCGGTGAATACAAGGATTGTGGGCG
ATTACATTATCGCTGAAGACGTTTCGGCTAAATGGACTTTAAGGCTGGGTAAGGACTATCTGTGCATCCGTTTTGTCAAA
AGGAGCAAAGGTGAATAA

Domains

Predicted by InterproScan.

• Conjugal transfer protein (CagX) (62-316)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB9	Helicobacter pylori P1	94.19	100	0.948