Detailed information NTG0439572

Bioinformatically predicted

Overview

• Name: comB6
• Type: Machinery gene
• Locus tag: HG581_RS00195
• Genome accession: NZ_CP051535
• Coordinates: 36335..37390 (+)
• Length: 351 a.a.
• NCBI ID: WP_202138490.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain LIM-008
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 31335..42390

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HG581_RS00165 (HG581_00165)	-	31753..32166 (+)	414	WP_001023011.1	universal stress protein	-
HG581_RS00170 (HG581_00170)	-	32187..32462 (+)	276	WP_202138489.1	ATP-dependent Clp protease adaptor ClpS	-
HG581_RS00175 (HG581_00175)	-	32462..34684 (+)	2223	WP_202138051.1	ATP-dependent Clp protease ATP-binding subunit	-
HG581_RS00180 (HG581_00180)	panD	34674..35027 (+)	354	WP_024368743.1	aspartate 1-decarboxylase	-
HG581_RS00185 (HG581_00185)	-	35030..35332 (+)	303	WP_202138052.1	YbaB/EbfC family nucleoid-associated protein	-
HG581_RS00190 (HG581_00190)	-	35332..36327 (+)	996	WP_202138491.1	PDZ domain-containing protein	-
HG581_RS00195 (HG581_00195)	comB6	36335..37390 (+)	1056	WP_202138490.1	P-type conjugative transfer protein TrbL	Machinery gene
HG581_RS00200 (HG581_00200)	comB7	37406..37519 (+)	114	WP_001217873.1	hypothetical protein	Machinery gene
HG581_RS00205 (HG581_00205)	comB8	37516..38253 (+)	738	WP_202138053.1	virB8 family protein	Machinery gene
HG581_RS00210 (HG581_00210)	comB9	38253..39230 (+)	978	WP_202138054.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
HG581_RS00215 (HG581_00215)	comB10	39223..40353 (+)	1131	WP_202138055.1	DNA type IV secretion system protein ComB10	Machinery gene
HG581_RS00220 (HG581_00220)	-	40424..41836 (+)	1413	WP_202138056.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-

Sequence

Protein

• Length: 351 a.a.
• Molecular weight: 39702.61 Da
• Isoelectric Point: 9.0406

>NTDB_id=439572 HG581_RS00195 WP_202138490.1 36335..37390(+) (comB6) [Helicobacter pylori strain LIM-008]
MKNDAYEIILSWFITPLTAILGRFAEFFLYTLHAQLVFNSVVALAFMLFAYRSLKEQNFFSASAILEALWFVGFFALFNY
ALKNPSRFYELFQNAIFIAPNMITQSLSQSLSNFSNHALSLDFIFNHGFYALSFISDLSHNEMSVWLFLSILQALFLSVL
FAIIILVYLEVHVWCSLGALFLAFGFFKTWRSVVVICLKKCFALGFYKPFLLLVGFLNVSVTKALIDASMQEKQDLSLLL
VVALFLCCVFIIGVPFFINALFRVQNSLKETYKLATNLSANLSQNALNSLQYITTSPAPSSVSTSTSGSVSKEKETHSPT
FKVETTQLDVKIPNFKQKKVKKDTINTKNEI

Nucleotide

• Length: 1056 bp

>NTDB_id=439572 HG581_RS00195 WP_202138490.1 36335..37390(+) (comB6) [Helicobacter pylori strain LIM-008]
ATGAAAAATGACGCTTATGAAATCATTCTTTCTTGGTTTATCACGCCTCTCACGGCGATTTTAGGGCGTTTCGCTGAATT
TTTCCTCTACACCTTGCATGCGCAATTGGTGTTTAATAGCGTGGTCGCTTTGGCGTTCATGCTCTTTGCTTATAGGAGTT
TGAAAGAACAGAATTTTTTCAGCGCTAGTGCGATTTTAGAGGCGTTATGGTTTGTGGGGTTTTTTGCACTGTTTAATTAC
GCTTTAAAAAACCCTTCGCGCTTTTATGAATTGTTTCAAAACGCTATTTTTATTGCGCCTAACATGATCACTCAAAGCCT
TTCTCAAAGCTTGAGTAACTTTTCTAACCACGCGCTTTCTTTAGATTTTATCTTTAATCATGGTTTTTATGCCCTTAGTT
TTATCAGCGATTTGAGCCATAATGAAATGTCTGTGTGGCTTTTTTTAAGCATCTTGCAAGCGCTTTTTTTAAGCGTTCTG
TTTGCGATTATCATTTTAGTGTATTTGGAAGTGCATGTGTGGTGTTCTTTAGGGGCGCTGTTTTTAGCGTTTGGGTTTTT
CAAAACCTGGAGGAGCGTTGTGGTTATATGCCTAAAAAAGTGCTTCGCTCTTGGGTTTTACAAGCCTTTTTTGTTGTTGG
TGGGGTTTTTGAACGTGTCGGTTACTAAGGCTTTAATAGACGCTAGCATGCAAGAAAAACAAGACTTAAGCCTTTTATTG
GTGGTAGCGTTATTTTTGTGTTGCGTCTTTATCATAGGCGTGCCTTTTTTCATCAACGCTTTGTTTAGGGTGCAAAACAG
CCTTAAAGAAACTTACAAACTCGCCACCAATTTGAGCGCTAACCTCAGCCAAAACGCCCTTAATTCCTTACAATATATCA
CGACCTCGCCCGCTCCCTCTAGCGTTTCTACTTCTACAAGCGGTAGCGTTTCTAAAGAAAAAGAAACGCATTCCCCCACA
TTTAAGGTAGAAACCACTCAATTAGATGTAAAAATTCCAAATTTCAAGCAAAAAAAGGTTAAAAAGGATACAATAAATAC
AAAAAATGAAATTTAA

Domains

Predicted by InterproScan.

• TrbL/VirB6 plasmid conjugal transfer protein (TrbL) (44-254)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB6	Helicobacter pylori 26695	95.157	100	0.952