Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   HHE93_RS01660 Genome accession   NZ_CP051529
Coordinates   362221..363747 (-) Length   508 a.a.
NCBI ID   WP_006084445.1    Uniprot ID   -
Organism   Shewanella baltica strain 11FHM2     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 357221..368747
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HHE93_RS01635 (HHE93_01655) prpB 357742..358620 (-) 879 WP_071940617.1 methylisocitrate lyase -
  HHE93_RS01640 (HHE93_01660) - 358678..359445 (-) 768 WP_012090443.1 GntR family transcriptional regulator -
  HHE93_RS01645 (HHE93_01665) - 359745..360260 (+) 516 WP_107402835.1 DUF523 domain-containing protein -
  HHE93_RS01650 (HHE93_01670) - 360257..361201 (-) 945 WP_259214620.1 acyltransferase -
  HHE93_RS01655 (HHE93_01675) - 361209..362111 (-) 903 WP_259214621.1 acyltransferase -
  HHE93_RS01660 (HHE93_01680) comM 362221..363747 (-) 1527 WP_006084445.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  HHE93_RS01665 (HHE93_01685) - 364261..365172 (-) 912 WP_259214623.1 WYL domain-containing protein -
  HHE93_RS01670 (HHE93_01690) - 365518..366654 (+) 1137 WP_259214624.1 multiubiquitin domain-containing protein -
  HHE93_RS01675 (HHE93_01695) - 366664..368067 (+) 1404 WP_259214625.1 ThiF family adenylyltransferase -
  HHE93_RS01680 (HHE93_01700) - 368064..368402 (+) 339 WP_259214626.1 DUF6527 family protein -

Sequence

Protein


Download         Length: 508 a.a.        Molecular weight: 55451.79 Da        Isoelectric Point: 8.3615

>NTDB_id=439503 HHE93_RS01660 WP_006084445.1 362221..363747(-) (comM) [Shewanella baltica strain 11FHM2]
MAIACVNTRASCGVEAPQVTVEVHLSNGLPAFNLVGLPEASVKEARERVRSALINAGFEFPMRRITVNLAPADLPKQGGR
YDLPIAVGILAASEQIPANSLKNLEFVGELALSGHIRYCQGLLPAIIAAKRQDHTLILPLDNRHDAELVGYPNVLFGSHL
QSLAAYLQGQNQLPTLAPQLEWISQETPESHTCLSDVIGQYQAKQALEIAAAGNHNLLMLGPPGTGKTMLASRMMALLPA
LNYEEALEVAAIHSVAGLDIKPQHFLQRPFRSPHHTSSSISLVGGGSIPKPGEISLAHRGVLFLDEVAEFPRKVLDCLRE
PMETGEVVISRAAAKLTFLSRFQLIAAMNPSPSGDIDSQHRSSPEQIQRYLSRLSGPFLDRFDLTIEVPKLPAGTLTQAA
PQTETSQDIAKRVKRARELQLARAGVLNSELTGKQLKRFSGISDADLVFLEQSVVKLGLSVRSFHRIQRVARTIADLEQV
PNTERRHIAQALGYRAMDRLLARLSQQY

Nucleotide


Download         Length: 1527 bp        

>NTDB_id=439503 HHE93_RS01660 WP_006084445.1 362221..363747(-) (comM) [Shewanella baltica strain 11FHM2]
ATGGCGATTGCCTGCGTCAATACCCGAGCCAGTTGTGGGGTCGAAGCTCCCCAAGTCACAGTTGAAGTGCATCTGAGTAA
CGGCTTACCGGCATTTAATCTAGTAGGATTACCCGAAGCGTCGGTGAAAGAAGCCCGCGAGCGGGTGCGCAGCGCACTGA
TCAATGCAGGATTCGAGTTTCCGATGCGGCGGATAACCGTTAACCTTGCGCCTGCAGATTTACCTAAACAAGGTGGCCGC
TACGATTTACCCATCGCCGTGGGCATACTAGCCGCCTCGGAACAAATCCCAGCTAATAGCTTAAAAAATCTTGAGTTTGT
CGGTGAGCTGGCACTGTCTGGGCACATACGTTATTGCCAAGGATTATTACCGGCGATTATCGCCGCTAAGCGCCAAGACC
ATACCTTGATATTACCGCTGGATAATCGCCACGATGCCGAGTTAGTCGGCTATCCTAATGTGTTGTTTGGCTCGCACCTT
CAGAGCTTAGCCGCTTATTTACAGGGGCAAAATCAGCTGCCGACGTTAGCGCCGCAATTAGAATGGATCAGCCAAGAGAC
GCCTGAGTCCCATACTTGCCTGAGCGATGTGATTGGCCAATATCAAGCCAAGCAAGCACTCGAAATTGCCGCGGCGGGGA
ACCATAACCTCCTGATGCTTGGCCCGCCAGGTACGGGCAAAACCATGCTTGCCAGCCGCATGATGGCGCTTTTACCCGCG
CTTAATTATGAGGAAGCATTAGAAGTAGCGGCGATTCATTCCGTTGCCGGACTCGACATTAAGCCGCAGCATTTTTTGCA
GCGACCATTTCGCTCGCCACACCACACAAGTTCGTCGATATCCCTCGTGGGTGGCGGCAGTATCCCCAAACCCGGTGAAA
TTTCCCTCGCCCACCGTGGCGTGCTGTTTTTAGATGAAGTGGCTGAATTTCCGCGTAAAGTCTTAGATTGCCTGCGCGAG
CCGATGGAGACCGGCGAAGTAGTGATTTCCCGCGCCGCCGCAAAGCTGACATTTTTGAGTCGCTTCCAACTAATCGCGGC
GATGAATCCCAGCCCGAGCGGTGATATCGATAGCCAACACAGATCGAGCCCAGAACAAATTCAGCGTTATCTTTCGCGGC
TTTCTGGCCCGTTTCTCGACCGCTTCGATTTAACCATTGAAGTCCCCAAACTCCCCGCAGGAACCTTGACTCAAGCCGCG
CCGCAAACAGAAACCAGCCAAGATATCGCCAAGCGAGTGAAACGAGCGCGTGAGCTGCAACTCGCCCGCGCTGGCGTGCT
CAATAGCGAACTCACAGGGAAACAATTGAAACGCTTTAGCGGGATCAGTGATGCTGATTTAGTGTTTTTGGAACAAAGCG
TGGTAAAGCTTGGCCTCTCGGTTCGCAGCTTCCACCGTATACAAAGAGTCGCGCGTACTATTGCCGATCTTGAACAAGTG
CCTAACACAGAACGCCGCCATATTGCCCAAGCACTGGGTTATCGCGCTATGGATAGATTACTCGCACGCTTATCCCAGCA
ATATTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(404-495)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(194-393)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

56.471

100

0.567
  comM Haemophilus influenzae Rd KW20

56.299

100

0.563
  comM Glaesserella parasuis strain SC1401

56.213

99.803

0.561
  comM Vibrio campbellii strain DS40M4

55.206

100

0.553
  comM Legionella pneumophila str. Paris

45.866

100

0.459
  comM Legionella pneumophila strain ERS1305867

45.866

100

0.459
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.952

97.638

0.429