NTDB

Overview

Name	comFC	Type	Machinery gene
Locus tag	HG420_RS08235	Genome accession	NZ_CP051518
Coordinates	1633683..1634333 (-)	Length	216 a.a.
NCBI ID	WP_015082373.1	Uniprot ID	A0AAJ6MHE1
Organism	Lactococcus cremoris strain F
Function	ssDNA transport into the cell (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1628683..1639333

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HG420_RS08205 (HG420_08215)	-	1628874..1630406 (+)	1533	WP_015082368.1	Nramp family divalent metal transporter	-
HG420_RS08210 (HG420_08220)	-	1630495..1631448 (+)	954	WP_015082369.1	PhoH family protein	-
HG420_RS08215 (HG420_08225)	-	1631518..1632012 (+)	495	WP_015082370.1	NUDIX hydrolase	-
HG420_RS08220 (HG420_08230)	ybeY	1632103..1632591 (+)	489	WP_011835335.1	rRNA maturation RNase YbeY	-
HG420_RS08225 (HG420_08235)	-	1632575..1633030 (+)	456	WP_015082371.1	diacylglycerol kinase	-
HG420_RS08230 (HG420_08240)	-	1633047..1633625 (+)	579	WP_015082372.1	nucleotidyltransferase family protein	-
HG420_RS08235 (HG420_08245)	comFC	1633683..1634333 (-)	651	WP_015082373.1	ComF family protein	Machinery gene
HG420_RS12440	comFA	1634333..1634845 (-)	513	WP_228763816.1	helicase-related protein	Machinery gene
HG420_RS12445	comFA	1634842..1635627 (-)	786	WP_228763967.1	DEAD/DEAH box helicase family protein	Machinery gene
HG420_RS08245 (HG420_08255)	-	1635684..1636319 (+)	636	WP_015082374.1	YigZ family protein	-
HG420_RS08250 (HG420_08260)	-	1636361..1636861 (+)	501	WP_168784118.1	VanZ family protein	-
HG420_RS08255 (HG420_08265)	-	1636948..1637946 (+)	999	WP_237025417.1	DUF475 domain-containing protein	-
HG420_RS08260 (HG420_08270)	-	1638055..1638822 (+)	768	WP_011676099.1	5'-nucleotidase	-

Sequence

Protein

Download Length: 216 a.a. Molecular weight: 25304.70 Da Isoelectric Point: 9.9870

                                >NTDB_id=439476 HG420_RS08235 WP_015082373.1 1633683..1634333(-) (comFC) [Lactococcus cremoris strain F]

MQTCLLCSRIIKQTLTFSEFFLLKNKRNLICNKCQSLFKKIPNERCPRCSKSNSKGICADCLKWEEKGIIVNHQSIFIYN

QAMKDYFSLYKFMGDYRLHEVFDSYFKNLSKKIPLVPIPVSPKRLQERGFNQVTAFLKDRAYLYLLEKEDIVRQSSLNRE

GRLSTSNPFKLKEGEKIPQKIILIDDIYTTGTTFYHAIKTLKKANPIEITTFSLCR

Nucleotide

Download Length: 651 bp

                                >NTDB_id=439476 HG420_RS08235 WP_015082373.1 1633683..1634333(-) (comFC) [Lactococcus cremoris strain F]

ATGCAAACTTGTCTGCTTTGTTCCAGAATTATCAAACAAACACTCACTTTTAGTGAATTCTTTTTACTAAAGAATAAGAG

AAATTTAATATGCAATAAATGCCAATCACTGTTTAAAAAAATTCCTAACGAACGTTGTCCTCGTTGCTCTAAATCTAACT

CTAAAGGTATATGTGCTGACTGTCTCAAGTGGGAAGAAAAAGGAATCATTGTTAATCATCAGTCAATTTTTATTTATAAC

CAAGCAATGAAGGATTACTTTAGTCTTTACAAATTTATGGGAGATTATCGATTACACGAAGTCTTCGATTCCTATTTTAA

AAATTTGTCCAAAAAAATTCCTCTGGTTCCCATTCCGGTTTCTCCTAAAAGATTACAAGAAAGAGGTTTTAACCAAGTAA

CAGCTTTTCTAAAAGATAGAGCTTATCTTTATTTGCTTGAAAAAGAGGATATTGTCAGACAATCAAGTCTTAATCGCGAG

GGACGTCTATCAACTAGCAATCCTTTTAAGTTGAAAGAGGGTGAAAAAATACCCCAAAAAATCATTTTGATTGATGATAT

TTATACAACTGGAACTACTTTTTATCATGCAATAAAAACCTTAAAGAAAGCTAATCCGATTGAAATTACAACTTTCTCAC

TCTGCCGTTAA

Domains

No domain identified.

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
comFC	Lactococcus lactis subsp. cremoris KW2	97.015	62.037	0.602
comFC/cflB	Streptococcus mitis NCTC 12261	49.083	100	0.495
comFC/cflB	Streptococcus mitis SK321	47.248	100	0.477
comFC/cflB	Streptococcus pneumoniae Rx1	46.789	100	0.472
comFC/cflB	Streptococcus pneumoniae D39	46.789	100	0.472
comFC/cflB	Streptococcus pneumoniae R6	46.789	100	0.472
comFC/cflB	Streptococcus pneumoniae TIGR4	46.789	100	0.472
comFC	Bacillus subtilis subsp. subtilis str. 168	34.802	100	0.366

Detailed information NTG0439476