Detailed information NTG0439435

Bioinformatically predicted

Overview

• Name: ruvB
• Type: Machinery gene
• Locus tag: INP70_RS05080
• Genome accession: NZ_CP063420
• Coordinates: 1096448..1097452 (+)
• Length: 334 a.a.
• NCBI ID: WP_000568494.1
• Uniprot ID: -
• Organism: Vibrio cholerae strain VC_hf7
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1091448..1102452

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
INP70_RS05055	lpxH	1092272..1093012 (-)	741	WP_193836570.1	UDP-2,3-diacylglucosamine diphosphatase	-
INP70_RS05060	-	1093053..1093547 (-)	495	WP_000631302.1	peptidylprolyl isomerase	-
INP70_RS05065	cysS	1093693..1095072 (+)	1380	WP_116671955.1	cysteine--tRNA ligase	-
INP70_RS05070	ruvC	1095160..1095681 (+)	522	WP_193836571.1	crossover junction endodeoxyribonuclease RuvC	-
INP70_RS05075	ruvA	1095778..1096392 (+)	615	WP_000580358.1	Holliday junction branch migration protein RuvA	Machinery gene
INP70_RS05080	ruvB	1096448..1097452 (+)	1005	WP_000568494.1	Holliday junction branch migration DNA helicase RuvB	Machinery gene
INP70_RS05085	cydA	1097911..1099497 (+)	1587	WP_000568053.1	cytochrome ubiquinol oxidase subunit I	-
INP70_RS05090	cydB	1099515..1100651 (+)	1137	WP_000460767.1	cytochrome d ubiquinol oxidase subunit II	-
INP70_RS05095	cydX	1100664..1100771 (+)	108	WP_000270285.1	cytochrome bd-I oxidase subunit CydX	-
INP70_RS05100	ybgE	1100764..1101081 (+)	318	WP_001286619.1	cyd operon protein YbgE	-
INP70_RS05105	ybgC	1101250..1101657 (+)	408	WP_001091290.1	tol-pal system-associated acyl-CoA thioesterase	-
INP70_RS05110	tolQ	1101647..1102330 (+)	684	WP_000123083.1	protein TolQ	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 37286.69 Da
• Isoelectric Point: 5.0460

>NTDB_id=439435 INP70_RS05080 WP_000568494.1 1096448..1097452(+) (ruvB) [Vibrio cholerae strain VC_hf7]
MIEADRLIAPTSNHFKDEEVIDRAIRPKKLADYQGQDHVRDQMEIFIQAAQMRQEALDHLLIFGPPGLGKTTLANIVANE
MGVNIRTTSGPVLEKAGDLAALLTNLEENDVLFIDEIHRLSPMVEEVLYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLI
GATTRAGSLTSPLRDRFGIVQRLEYYKVADLQHIVQRSAQCLGLSMDSEGALEVARRARGTPRIANRLLRRVRDYAEVKG
DGHICAQTADRALNMLDVDHQGFDYMDRKLLLAIMEKFSGGPVGIDNLAAAIGEEKDTIEDVLEPFLIQQGYLQRTPRGR
IATDRAYLHFGIEK

Nucleotide

• Length: 1005 bp

>NTDB_id=439435 INP70_RS05080 WP_000568494.1 1096448..1097452(+) (ruvB) [Vibrio cholerae strain VC_hf7]
ATGATAGAAGCCGATCGTTTAATTGCTCCAACCAGCAACCACTTCAAAGATGAGGAAGTGATTGATCGAGCGATTCGTCC
CAAAAAGCTTGCCGATTACCAAGGTCAGGATCATGTTCGTGATCAGATGGAAATCTTCATTCAGGCGGCACAAATGCGCC
AAGAAGCCTTAGACCATCTGCTGATTTTCGGGCCTCCGGGCTTGGGTAAAACCACCTTGGCCAACATAGTCGCTAACGAA
ATGGGCGTGAATATTCGTACTACTTCAGGTCCTGTATTGGAAAAAGCGGGAGATTTAGCGGCACTGCTAACCAATCTTGA
AGAAAACGATGTGCTGTTTATTGATGAAATCCATCGTTTAAGCCCAATGGTTGAGGAAGTACTGTATCCCGCTATGGAAG
ATTACCAACTCGATATCATGATTGGTGAAGGCCCAGCTGCACGCTCAATCAAAATCGATCTCCCTCCTTTTACTTTAATT
GGAGCCACCACACGTGCAGGCTCGCTGACTTCACCACTGCGTGACCGATTTGGGATTGTGCAACGATTGGAGTATTACAA
AGTCGCCGATTTACAACACATAGTGCAACGTAGTGCGCAGTGTCTCGGTCTTTCGATGGATAGTGAGGGCGCTCTTGAAG
TGGCTCGCCGTGCACGTGGAACCCCACGGATTGCCAATCGCCTGCTGCGCCGGGTACGAGATTATGCCGAAGTAAAAGGG
GATGGGCACATTTGTGCGCAAACCGCTGACAGGGCACTCAATATGCTTGATGTTGACCATCAAGGCTTTGATTACATGGA
TAGAAAGCTGCTGTTAGCAATAATGGAAAAGTTTTCAGGTGGCCCAGTCGGAATCGATAACCTTGCGGCAGCTATTGGCG
AAGAGAAAGATACGATAGAAGATGTTCTTGAGCCATTTCTCATTCAGCAGGGTTATTTACAACGTACACCACGCGGTCGT
ATCGCGACAGATCGCGCTTATTTGCATTTCGGTATTGAAAAATAA

Domains

Predicted by InterProScan.

• Holliday junction DNA helicase RuvB P-loop domain (RuvB_N) (25-183)

• RuvB AAA lid domain (AAA_lid_4) (186-259)

• RuvB C-terminal winged helix domain (WHD_RuvB) (261-330)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ruvB	Bacillus subtilis subsp. subtilis str. 168	60.606	98.802	0.599
ruvB	Streptococcus pneumoniae TIGR4	59.937	94.91	0.569
ruvB	Streptococcus pneumoniae R6	59.937	94.91	0.569
ruvB	Streptococcus pneumoniae D39	59.937	94.91	0.569
ruvB	Synechocystis sp. PCC 6803	54.348	96.407	0.524
ruvB	Helicobacter pylori 26695	54.276	91.018	0.494