Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   INP70_RS05075 Genome accession   NZ_CP063420
Coordinates   1095778..1096392 (+) Length   204 a.a.
NCBI ID   WP_000580358.1    Uniprot ID   -
Organism   Vibrio cholerae strain VC_hf7     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1090778..1101392
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  INP70_RS05050 - 1090962..1092176 (-) 1215 WP_001905415.1 EAL and HDOD domain-containing protein -
  INP70_RS05055 lpxH 1092272..1093012 (-) 741 WP_193836570.1 UDP-2,3-diacylglucosamine diphosphatase -
  INP70_RS05060 - 1093053..1093547 (-) 495 WP_000631302.1 peptidylprolyl isomerase -
  INP70_RS05065 cysS 1093693..1095072 (+) 1380 WP_116671955.1 cysteine--tRNA ligase -
  INP70_RS05070 ruvC 1095160..1095681 (+) 522 WP_193836571.1 crossover junction endodeoxyribonuclease RuvC -
  INP70_RS05075 ruvA 1095778..1096392 (+) 615 WP_000580358.1 Holliday junction branch migration protein RuvA Machinery gene
  INP70_RS05080 ruvB 1096448..1097452 (+) 1005 WP_000568494.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  INP70_RS05085 cydA 1097911..1099497 (+) 1587 WP_000568053.1 cytochrome ubiquinol oxidase subunit I -
  INP70_RS05090 cydB 1099515..1100651 (+) 1137 WP_000460767.1 cytochrome d ubiquinol oxidase subunit II -
  INP70_RS05095 cydX 1100664..1100771 (+) 108 WP_000270285.1 cytochrome bd-I oxidase subunit CydX -
  INP70_RS05100 ybgE 1100764..1101081 (+) 318 WP_001286619.1 cyd operon protein YbgE -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 21994.67 Da        Isoelectric Point: 5.0954

>NTDB_id=439434 INP70_RS05075 WP_000580358.1 1095778..1096392(+) (ruvA) [Vibrio cholerae strain VC_hf7]
MIGRLRGTLIEKLPPQILIEVGGIGYEVQMPMSCIYELPNIGEEAIIYTHFVVREDAQLLYGFNTVSERALFREVIKANG
VGPKMGLAILSGMTANQFVSCVEKEDISTLIKLPGVGKKTAERLVVEMKDRLKGWGAGDLFTPATDAAPVDSTPVIAQNA
QEEAMSALLALGYKPPQASKAVSQVAKAGMSSEELIREALKSMV

Nucleotide


Download         Length: 615 bp        

>NTDB_id=439434 INP70_RS05075 WP_000580358.1 1095778..1096392(+) (ruvA) [Vibrio cholerae strain VC_hf7]
GTGATTGGACGTCTTCGCGGTACGCTGATTGAAAAGTTACCTCCTCAAATTTTGATTGAGGTCGGTGGTATTGGCTATGA
AGTGCAAATGCCGATGAGCTGTATTTATGAACTGCCGAATATTGGGGAAGAAGCCATCATTTATACCCACTTTGTAGTTC
GAGAAGATGCACAGCTACTTTATGGCTTTAATACCGTTAGCGAACGCGCTCTGTTTCGTGAAGTAATCAAAGCCAATGGC
GTAGGGCCGAAAATGGGGCTTGCGATCCTCTCTGGCATGACAGCCAATCAGTTTGTTAGTTGTGTTGAAAAAGAAGACAT
ATCTACACTGATCAAACTACCGGGTGTTGGCAAGAAAACAGCAGAACGCTTGGTTGTAGAAATGAAAGATCGTCTAAAAG
GATGGGGGGCTGGTGATCTCTTTACGCCTGCAACCGATGCGGCCCCTGTCGATTCTACGCCCGTGATTGCTCAAAATGCT
CAGGAAGAAGCCATGAGCGCGCTATTGGCGCTAGGTTACAAGCCCCCTCAAGCTTCCAAAGCGGTATCGCAAGTAGCTAA
AGCAGGAATGAGCAGTGAAGAGTTGATCCGTGAAGCGCTCAAATCTATGGTGTAA

Domains

Predicted by InterProScan.

RuvA, C-terminal domain (RuvA_C)

(159-203)

Helix-hairpin-helix domain (HHH_5)

(72-130)

RuvA N terminal domain (RuvA_N)

(1-62)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae TIGR4

36.098

100

0.363