Detailed information NTG0439098

Bioinformatically predicted

Overview

• Name: comB10
• Type: Machinery gene
• Locus tag: HG571_RS02320
• Genome accession: NZ_CP051496
• Coordinates: 480525..481724 (-)
• Length: 399 a.a.
• NCBI ID: WP_202141022.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain PUNO-008
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 475525..486724

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HG571_RS02295 (HG571_02300)	-	475581..476099 (-)	519	WP_202141018.1	replication regulatory RepB family protein	-
HG571_RS02300 (HG571_02305)	-	476096..477040 (-)	945	WP_000365304.1	CpaF/VirB11 family protein	-
HG571_RS02305 (HG571_02310)	-	477045..477320 (-)	276	WP_202141019.1	hypothetical protein	-
HG571_RS02310 (HG571_02315)	-	477338..478297 (-)	960	WP_202141020.1	hypothetical protein	-
HG571_RS02315 (HG571_02320)	-	478310..480541 (-)	2232	WP_202141021.1	collagen-like protein	-
HG571_RS02320 (HG571_02325)	comB10	480525..481724 (-)	1200	WP_202141022.1	DNA type IV secretion system protein ComB10	Machinery gene
HG571_RS02325 (HG571_02330)	-	481721..483352 (-)	1632	WP_202141023.1	TrbG/VirB9 family P-type conjugative transfer protein	-
HG571_RS02330 (HG571_02335)	-	483349..484515 (-)	1167	WP_202141024.1	VirB8/TrbF family protein	-
HG571_RS07940	-	484508..484642 (-)	135	WP_202147098.1	type IV secretion system protein VirB7	-

Sequence

Protein

• Length: 399 a.a.
• Molecular weight: 44529.15 Da
• Isoelectric Point: 9.9916

>NTDB_id=439098 HG571_RS02320 WP_202141022.1 480525..481724(-) (comB10) [Helicobacter pylori strain PUNO-008]
MNKSLLKKIGLVIGGFGVLMALGLLANKGSNNNNKEEIFQVSESKFPLSDYFFEEVKEEPKKEESPKTTTTPQPTAPTTA
NVSTNPIITDYSHLNNNLNKQHNTLTHLQQVLQSPPKIKPKPKHTKEQLEFLNTRLKPLEPTKPATKPETEYGVDSFTNL
KYKDIGTNEHKLLRTITADRMIPAFLITPISSQIAGKVTAQVESDIFASMGRAVLIPKGSKVIGYYNNNDQIGQYRLNIA
WTRIITPQGINIMLTNARGADVKGYNGLVGKYISRNFQRYGIPLLTNTLSNGLLIGITSALANNQNKKGDGNPFFGDYLL
MQLTRNTGMGINQVINQMLRQYGAQNPIIIIREGSRVFISPNLDIFIPKPKDGEVLAEFFKEKKPLITTKEEVNNEEEI

Nucleotide

• Length: 1200 bp

>NTDB_id=439098 HG571_RS02320 WP_202141022.1 480525..481724(-) (comB10) [Helicobacter pylori strain PUNO-008]
ATGAATAAATCCTTGCTTAAAAAGATAGGCTTAGTTATAGGGGGCTTTGGCGTTTTAATGGCATTAGGACTGCTTGCTAA
TAAAGGCTCAAACAATAACAATAAAGAAGAAATCTTTCAAGTAAGCGAGAGCAAATTCCCCCTAAGTGATTATTTCTTTG
AAGAAGTCAAAGAAGAACCTAAAAAAGAAGAAAGCCCCAAAACAACAACCACGCCACAACCTACAGCTCCAACTACTGCT
AATGTTTCAACTAATCCTATCATTACAGATTATAGTCATCTTAACAACAATCTAAACAAGCAACATAACACCCTTACGCA
TTTACAACAAGTTTTACAAAGCCCCCCTAAAATAAAGCCTAAACCAAAACATACTAAAGAGCAATTAGAGTTTTTAAACA
CACGCCTTAAACCCTTAGAGCCAACTAAACCAGCTACTAAACCTGAGACGGAATATGGCGTGGATAGTTTTACTAATTTA
AAATATAAAGACATTGGCACTAATGAGCATAAGCTCTTAAGAACTATAACCGCTGATAGAATGATACCAGCCTTTTTAAT
CACGCCTATTAGCTCTCAAATTGCTGGAAAAGTAACCGCTCAAGTAGAGAGCGATATTTTTGCCTCTATGGGTAGAGCGG
TGCTAATCCCTAAAGGTTCTAAGGTTATAGGCTATTACAACAACAATGATCAAATCGGACAATACCGCTTAAATATTGCT
TGGACTAGAATTATCACCCCTCAAGGCATAAATATCATGCTCACTAATGCAAGAGGGGCTGATGTGAAAGGCTATAATGG
CTTAGTAGGCAAATACATTAGCCGAAATTTTCAACGCTATGGTATCCCCTTACTCACTAACACGCTTTCTAATGGGCTTT
TAATAGGAATTACTTCAGCCTTAGCTAATAACCAAAACAAAAAAGGTGATGGCAACCCTTTTTTTGGGGATTATTTGCTT
ATGCAACTCACTAGAAACACAGGCATGGGGATTAACCAAGTCATCAATCAAATGCTAAGACAATATGGAGCACAAAACCC
CATTATCATCATTAGAGAGGGGAGCAGAGTGTTTATTAGCCCTAATTTAGACATTTTTATCCCTAAACCAAAAGATGGGG
AGGTTCTAGCGGAGTTTTTTAAAGAGAAAAAACCCCTAATCACAACAAAAGAGGAAGTTAACAATGAAGAAGAAATCTAA

Domains

Predicted by InterProScan.

• Bacterial conjugation TrbI-like protein (TrbI) (175-365)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB10	Helicobacter pylori P1	53.401	99.499	0.531