Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   HG571_RS01620 Genome accession   NZ_CP051496
Coordinates   334844..335248 (+) Length   134 a.a.
NCBI ID   WP_202140931.1    Uniprot ID   -
Organism   Helicobacter pylori strain PUNO-008     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 329844..340248
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HG571_RS01585 (HG571_01595) - 330017..330955 (-) 939 WP_202140928.1 tetraacyldisaccharide 4'-kinase -
  HG571_RS01590 (HG571_01600) - 330952..331734 (-) 783 WP_202140929.1 NAD+ synthase -
  HG571_RS01600 (HG571_01610) ilvC 331983..332975 (+) 993 WP_202140930.1 ketol-acid reductoisomerase -
  HG571_RS01605 (HG571_01615) minD 332999..333805 (+) 807 WP_015643076.1 septum site-determining protein MinD -
  HG571_RS01610 (HG571_01620) minE 333802..334035 (+) 234 WP_000051412.1 cell division topological specificity factor MinE -
  HG571_RS01615 (HG571_01625) dprA 334047..334847 (+) 801 WP_000840088.1 DNA-processing protein DprA Machinery gene
  HG571_RS01620 (HG571_01630) dprB 334844..335248 (+) 405 WP_202140931.1 Holliday junction resolvase RuvX Machinery gene
  HG571_RS01625 (HG571_01635) - 335378..336529 (+) 1152 WP_202140932.1 tetratricopeptide repeat protein -
  HG571_RS01630 (HG571_01640) - 336718..337056 (+) 339 WP_089482812.1 hypothetical protein -
  HG571_RS01635 (HG571_01645) - 337040..337606 (+) 567 WP_202140933.1 hypothetical protein -
  HG571_RS01640 (HG571_01650) - 337618..337950 (+) 333 WP_202140934.1 lysozyme -
  HG571_RS07925 - 337974..338198 (+) 225 WP_237393003.1 hypothetical protein -
  HG571_RS01650 (HG571_01660) - 338628..339008 (+) 381 Protein_323 DUF1294 domain-containing protein -
  HG571_RS01655 (HG571_01665) - 339008..339793 (+) 786 WP_202140935.1 hypothetical protein -

Sequence

Protein


Download         Length: 134 a.a.        Molecular weight: 15166.61 Da        Isoelectric Point: 8.7194

>NTDB_id=439097 HG571_RS01620 WP_202140931.1 334844..335248(+) (dprB) [Helicobacter pylori strain PUNO-008]
MILACDVGLKRIGIAALLNGVILPLEAILRHNRNQASRDLSDLLREKNIQVLVVGKPNESYADTNARIEHFIKLLDFKGE
IVFINEDRSSIEAYENLEHLGKKNKRLAIKDGRLDSLSACGILERYCQQVLKNR

Nucleotide


Download         Length: 405 bp        

>NTDB_id=439097 HG571_RS01620 WP_202140931.1 334844..335248(+) (dprB) [Helicobacter pylori strain PUNO-008]
GTGATTTTGGCATGCGATGTGGGGTTAAAACGCATTGGGATCGCTGCACTTTTGAACGGCGTTATCTTGCCTTTAGAAGC
GATTTTACGCCACAACAGGAATCAGGCCTCTAGGGATTTGAGCGATTTATTGAGGGAAAAAAACATTCAGGTGCTGGTGG
TGGGCAAGCCCAATGAAAGCTATGCGGACACGAACGCGCGCATTGAACATTTCATCAAGCTTTTGGATTTTAAGGGCGAA
ATCGTTTTTATTAATGAAGACAGATCCAGCATAGAAGCCTATGAAAATTTAGAGCATTTGGGTAAGAAAAACAAGCGGCT
TGCTATTAAAGACGGCCGGCTAGACTCTTTGAGCGCTTGTGGGATCTTGGAGCGCTATTGCCAGCAGGTTTTGAAAAATC
GCTAG

Domains

Predicted by InterproScan.

Holliday junction resolvase (RuvX)

(2-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

96.992

99.254

0.963