Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   PSF113_RS59495 Genome accession   NC_016830
Coordinates   6605839..6607332 (+) Length   497 a.a.
NCBI ID   WP_014340837.1    Uniprot ID   -
Organism   Pseudomonas ogarae     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 6600839..6612332
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PSF113_RS61520 - 6602106..6602228 (+) 123 Protein_5863 accessory factor UbiK family protein -
  PSF113_RS59475 (PSF113_5729) - 6602247..6602600 (-) 354 WP_014340835.1 ATP-binding protein -
  PSF113_RS59480 (PSF113_5730) tnpB 6602672..6603031 (+) 360 WP_007247730.1 IS66 family insertion sequence element accessory protein TnpB -
  PSF113_RS59485 (PSF113_5731) - 6603050..6604582 (+) 1533 WP_041475741.1 IS66 family transposase -
  PSF113_RS59490 (PSF113_5732) - 6604613..6605572 (-) 960 WP_014340836.1 HAMP domain-containing histidine kinase -
  PSF113_RS59495 (PSF113_5733) comM 6605839..6607332 (+) 1494 WP_014340837.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  PSF113_RS59500 (PSF113_5734) - 6607339..6608553 (-) 1215 WP_014340838.1 aldose 1-epimerase family protein -
  PSF113_RS63690 - 6608791..6609651 (-) 861 WP_371916700.1 methyl-accepting chemotaxis protein -
  PSF113_RS63695 - 6609694..6610767 (-) 1074 Protein_5871 Cache 3/Cache 2 fusion domain-containing protein -
  PSF113_RS59510 (PSF113_5736) - 6610953..6611873 (-) 921 WP_014340840.1 LysR substrate-binding domain-containing protein -

Sequence

Protein


Download         Length: 497 a.a.        Molecular weight: 53097.15 Da        Isoelectric Point: 8.0108

>NTDB_id=43761 PSF113_RS59495 WP_014340837.1 6605839..6607332(+) (comM) [Pseudomonas ogarae]
MSLAIVHSRAQVGVEAPAVTVEVHLANGLPSLTMVGLPEAAVKESKDRVRSAIINSGLNFPARRITLNLAPADLPKDGGR
FDLAIALGILSASVQVPTLTLDDVECLGELALSGAVRPVRGVLPAALAARKAGRMLVVPRANAEEACLASGLKVIAVDHL
LEAVAHFNGHTPVEPFVSNGLLSASKPYPDLNEVQGQAGAKRALLIAAAGAHNLLFSGPPGTGKTLLASRLPGLLPPLAE
SEALEVAAIQSVASCIPLSHWPQRPFRQPHHSASGPALVGGGSKPQPGEITLAHHGVLFLDELPEFDRRVLEVLREPLES
GHIVVSRARDRVRFPARFQLVAAMNPCPCGYLGEPSGRCCCTPDMVQRYRNKLSGPLLDRIDLHLTVAREATALNPKRET
GDDTATVAEQVAEARERQHKRQGCANAFLDLPGLRQHCKLSTTDETWLETACERLTLSLRAAHRLLKVARTLADLEQAGS
IRREHLAEALQYRPTTA

Nucleotide


Download         Length: 1494 bp        

>NTDB_id=43761 PSF113_RS59495 WP_014340837.1 6605839..6607332(+) (comM) [Pseudomonas ogarae]
ATGTCGCTTGCCATTGTCCACAGCCGCGCCCAAGTAGGGGTCGAGGCTCCTGCCGTTACCGTTGAAGTCCACCTGGCCAA
TGGCTTGCCGTCGCTGACGATGGTTGGCCTGCCGGAAGCGGCGGTGAAGGAAAGCAAGGATCGGGTGCGCAGCGCGATCA
TCAATTCGGGGCTGAACTTCCCGGCACGGCGCATCACCCTGAACCTGGCGCCGGCGGACCTGCCCAAGGACGGCGGGCGC
TTCGACCTGGCCATTGCCTTGGGGATCCTGTCGGCCAGCGTGCAGGTGCCAACCCTGACGCTGGACGACGTGGAATGCCT
CGGTGAACTGGCCTTGTCCGGCGCGGTGCGACCGGTGCGCGGGGTATTGCCCGCGGCGCTGGCGGCGCGCAAGGCCGGGC
GCATGCTGGTGGTGCCGCGGGCCAATGCCGAGGAGGCCTGCCTGGCCTCGGGGCTGAAGGTGATCGCCGTGGACCATCTG
CTCGAAGCGGTGGCGCACTTCAACGGTCACACGCCGGTCGAGCCTTTCGTTTCCAACGGGCTGCTCTCGGCCAGCAAGCC
CTACCCCGACCTGAACGAAGTACAAGGCCAGGCCGGGGCCAAGCGGGCCTTGCTGATTGCCGCCGCGGGGGCTCACAACC
TGTTGTTCAGTGGGCCACCGGGCACCGGCAAGACCCTGCTGGCGAGCCGTTTGCCAGGGCTGTTGCCACCGCTGGCCGAA
AGCGAAGCCCTGGAGGTCGCGGCCATCCAGTCGGTGGCCAGTTGCATACCGTTGAGCCACTGGCCGCAACGCCCGTTTCG
CCAGCCACACCACTCGGCTTCCGGCCCGGCGCTGGTGGGTGGCGGGTCAAAGCCGCAGCCAGGGGAGATCACCCTCGCCC
ACCATGGCGTGCTGTTTCTCGATGAGCTGCCGGAATTCGACCGCAGGGTACTGGAAGTCTTGAGAGAGCCGCTGGAGTCC
GGGCACATCGTGGTTTCTCGCGCCCGTGACCGAGTACGCTTCCCGGCGCGTTTCCAGTTGGTGGCGGCAATGAATCCCTG
CCCCTGTGGATATCTTGGCGAGCCCAGCGGCCGCTGCTGCTGTACACCGGACATGGTGCAGCGCTACCGCAACAAACTCT
CCGGGCCGCTGCTGGACCGTATCGACCTGCACTTGACCGTCGCCCGGGAAGCCACGGCGTTAAACCCCAAGCGCGAAACC
GGGGACGATACAGCCACGGTCGCCGAGCAGGTGGCCGAGGCCCGGGAGCGTCAGCACAAGCGCCAGGGCTGCGCCAACGC
CTTCCTCGATCTGCCGGGGTTGCGCCAACACTGCAAGTTATCCACAACCGATGAGACCTGGCTGGAAACCGCCTGCGAGC
GGCTGACCCTGTCATTGCGCGCCGCCCACCGCTTGCTCAAGGTCGCCCGGACGCTGGCAGACCTGGAGCAAGCGGGGAGC
ATCCGTCGCGAACACCTGGCCGAAGCGTTGCAGTATCGGCCGACTACGGCTTGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-493)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-390)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

55.354

99.598

0.551
  comM Vibrio cholerae strain A1552

55.152

99.598

0.549
  comM Haemophilus influenzae Rd KW20

53.307

100

0.535
  comM Glaesserella parasuis strain SC1401

52.8

100

0.531
  comM Legionella pneumophila str. Paris

50

99.799

0.499
  comM Legionella pneumophila strain ERS1305867

50

99.799

0.499
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.833

100

0.465

Multiple sequence alignment