Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   HEP75_RS02305 Genome accession   NZ_CP051261
Coordinates   510038..511597 (-) Length   519 a.a.
NCBI ID   WP_185825292.1    Uniprot ID   -
Organism   Xanthomonas sp. SI     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 505038..516597
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HEP75_RS02285 (HEP75_00444) - 506120..506629 (+) 510 WP_255423970.1 preprotein translocase subunit SecD -
  HEP75_RS02290 (HEP75_00445) ubiA 507091..507993 (-) 903 WP_185825290.1 4-hydroxybenzoate octaprenyltransferase -
  HEP75_RS02300 (HEP75_00447) - 508872..509702 (+) 831 WP_185825291.1 alpha/beta hydrolase -
  HEP75_RS02305 (HEP75_00448) comM 510038..511597 (-) 1560 WP_185825292.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  HEP75_RS02310 (HEP75_00449) - 511611..511880 (-) 270 WP_185825293.1 accessory factor UbiK family protein -
  HEP75_RS02315 (HEP75_00450) - 512057..512395 (+) 339 WP_003480503.1 P-II family nitrogen regulator -
  HEP75_RS02320 (HEP75_00451) - 513224..515203 (+) 1980 WP_185825294.1 beta-N-acetylglucosaminidase domain-containing protein -
  HEP75_RS02325 (HEP75_00452) - 515398..516129 (-) 732 WP_185825295.1 hypothetical protein -

Sequence

Protein


Download         Length: 519 a.a.        Molecular weight: 55012.72 Da        Isoelectric Point: 8.6023

>NTDB_id=437127 HEP75_RS02305 WP_185825292.1 510038..511597(-) (comM) [Xanthomonas sp. SI]
MSLALVHSRARAGVLAPPVRVEVHLSGGLPATQIVGLPEAAVRESRDRVRAAILCAQYEFPARRITVNLAPADLPKEGGR
FDLPIALGILAAAGQLDPQALGNYEFLGELALTGELRAVDGVLPAALAAAQAGRTLIVPAGNGPEAALAQHVQAFTARTL
LEVCALLNGTKTLPAAEALPAAATPFPDLSDVRGQAQARRALEIAAAGHHHLLLIGSPGCGKTLLASRLPGILPETSEAE
ALEAAAIASVSGRGLDPSRWRQRPYRSPHHTASAVSLVGGGTHPRPGEISLAHRGVLFLDELPEWNRHALEVLREPLESG
TVTVSRAARSAEFPARFQLVAAMNPCPCGWAGDTSGRCRCSDDSIRRYRARISGPLLDRIDLHVDVPRLPPQALRADAAP
GESSAAVRARVEQARQRQLARASCPNGQLGHSETLRDCRLQPRDEALLEHAIDRLRLSARSLHRILRVARTIADLAESDA
IATAHLTEAIGYRQLDRGESAASQADVFARAGAARHAAR

Nucleotide


Download         Length: 1560 bp        

>NTDB_id=437127 HEP75_RS02305 WP_185825292.1 510038..511597(-) (comM) [Xanthomonas sp. SI]
ATGAGCCTGGCGCTGGTGCACAGCCGTGCCCGCGCGGGGGTGCTTGCGCCTCCGGTTCGGGTCGAGGTCCATCTGTCCGG
CGGCCTGCCGGCGACGCAGATCGTCGGCCTGCCCGAGGCCGCGGTACGCGAATCGCGCGATCGCGTGCGTGCCGCCATCC
TATGCGCGCAATACGAATTTCCGGCGCGGCGCATCACCGTCAACCTGGCCCCGGCCGACCTGCCCAAGGAAGGCGGCCGC
TTCGACCTGCCGATCGCGCTGGGCATCCTCGCCGCCGCCGGGCAACTCGACCCACAGGCGCTGGGCAACTACGAATTCCT
CGGCGAATTGGCCTTGACCGGCGAGCTGCGTGCCGTGGACGGCGTGCTGCCGGCGGCGCTGGCCGCCGCCCAGGCCGGGC
GCACGCTGATCGTGCCGGCCGGCAACGGTCCCGAAGCAGCGCTGGCGCAGCACGTGCAGGCGTTCACCGCGCGTACCCTG
CTCGAAGTCTGCGCGCTGTTGAACGGTACCAAGACCTTGCCCGCCGCCGAAGCCCTGCCGGCCGCAGCCACGCCGTTTCC
CGACCTGAGCGACGTGCGCGGGCAAGCCCAGGCGCGGCGGGCGCTGGAGATCGCGGCGGCCGGTCATCACCATCTGTTGT
TGATCGGCAGCCCGGGCTGCGGCAAGACCTTGCTGGCCTCGCGTTTGCCCGGCATCCTGCCCGAGACCAGCGAGGCCGAG
GCGCTGGAAGCGGCGGCGATCGCCTCGGTCAGCGGCCGCGGCCTGGATCCATCGCGCTGGCGGCAACGCCCCTACCGATC
CCCGCACCACACCGCCAGCGCGGTGTCGCTGGTCGGCGGCGGCACCCATCCACGCCCTGGCGAGATCTCGCTGGCGCATC
GCGGCGTTTTGTTCCTCGACGAATTGCCCGAATGGAACCGGCATGCGCTGGAAGTGCTGCGCGAGCCGCTGGAATCGGGC
ACGGTCACCGTCTCGCGGGCCGCGCGCAGCGCCGAGTTCCCGGCCCGGTTCCAGCTGGTCGCAGCGATGAACCCCTGCCC
TTGCGGCTGGGCCGGCGATACCAGCGGCCGTTGCCGCTGCAGCGACGACAGCATCCGCCGCTACCGCGCGCGCATCTCCG
GTCCGTTGCTGGACCGCATCGACCTGCACGTGGACGTACCGCGCCTGCCGCCACAGGCGCTGCGCGCCGATGCCGCCCCC
GGCGAAAGCAGCGCCGCCGTGCGCGCCCGGGTGGAGCAGGCGCGGCAACGCCAGCTGGCGCGCGCCAGCTGCCCCAACGG
CCAGCTCGGCCACAGCGAGACCTTGCGCGACTGCCGCCTGCAACCGCGCGACGAAGCGCTGCTGGAACACGCCATCGACC
GCCTGCGCCTGTCGGCGCGCTCCTTGCACCGCATCCTGCGCGTGGCGCGCACCATTGCCGACTTGGCCGAAAGCGATGCG
ATCGCCACCGCGCACCTGACCGAGGCGATCGGCTATCGGCAACTGGATCGCGGCGAGTCCGCAGCGTCGCAAGCAGACGT
CTTCGCGCGCGCAGGCGCAGCCCGGCACGCGGCAAGATAG

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(188-392)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-493)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

56.112

96.146

0.539
  comM Vibrio campbellii strain DS40M4

54.582

96.724

0.528
  comM Haemophilus influenzae Rd KW20

54.076

96.917

0.524
  comM Glaesserella parasuis strain SC1401

53.28

96.917

0.516
  comM Legionella pneumophila str. Paris

50.595

97.11

0.491
  comM Legionella pneumophila strain ERS1305867

50.595

97.11

0.491
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

44.97

97.688

0.439