Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   HGD76_RS24200 Genome accession   NZ_CP051206
Coordinates   5087754..5088125 (+) Length   123 a.a.
NCBI ID   WP_148765165.1    Uniprot ID   A0A6H2C697
Organism   Dolichospermum flos-aquae CCAP 1403/13F     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5082754..5093125
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HGD76_RS24185 (HGD76_24190) - 5083074..5084066 (+) 993 WP_015079743.1 zinc-dependent alcohol dehydrogenase family protein -
  HGD76_RS24190 (HGD76_24195) - 5084083..5086371 (+) 2289 WP_210967683.1 pentapeptide repeat-containing protein -
  HGD76_RS24195 (HGD76_24200) - 5086490..5087362 (+) 873 WP_168697275.1 S-methyl-5'-thioadenosine phosphorylase -
  HGD76_RS24200 (HGD76_24205) pilH 5087754..5088125 (+) 372 WP_148765165.1 response regulator transcription factor Machinery gene
  HGD76_RS24205 (HGD76_24210) - 5088133..5088666 (+) 534 WP_168697276.1 chemotaxis protein CheW -
  HGD76_RS24210 (HGD76_24215) - 5088683..5091472 (+) 2790 WP_168697277.1 methyl-accepting chemotaxis protein -
  HGD76_RS24215 (HGD76_24220) - 5091479..5091613 (-) 135 WP_168697278.1 alpha/beta hydrolase -

Sequence

Protein


Download         Length: 123 a.a.        Molecular weight: 13598.85 Da        Isoelectric Point: 6.4609

>NTDB_id=436935 HGD76_RS24200 WP_148765165.1 5087754..5088125(+) (pilH) [Dolichospermum flos-aquae CCAP 1403/13F]
MSTILIVEDSIVQREMITDLLKASGLKVTHASDGAEALEAIHKAPPDLVVLDIVMPRMNGYELCRRLKSDPKTQNVPVVM
CSSKGEEFDRYWGMKQGADAYIAKPFQPIELVGTVKQLLRGQG

Nucleotide


Download         Length: 372 bp        

>NTDB_id=436935 HGD76_RS24200 WP_148765165.1 5087754..5088125(+) (pilH) [Dolichospermum flos-aquae CCAP 1403/13F]
ATGAGCACAATTCTAATTGTTGAGGACAGTATCGTCCAAAGAGAGATGATCACAGACCTTCTGAAAGCTAGTGGCTTAAA
AGTTACTCATGCAAGCGATGGCGCAGAAGCTTTAGAAGCCATTCACAAAGCACCTCCCGATTTGGTGGTTTTGGATATTG
TCATGCCCCGCATGAATGGCTATGAACTCTGTCGGCGCTTAAAATCTGATCCTAAAACCCAAAATGTTCCTGTAGTCATG
TGTTCTTCTAAAGGTGAAGAATTCGATCGCTATTGGGGGATGAAACAAGGGGCAGATGCCTATATAGCTAAACCCTTTCA
ACCAATCGAGTTGGTAGGAACAGTCAAACAACTGCTGCGAGGACAAGGATGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6H2C697

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

74.38

98.374

0.732
  micA Streptococcus pneumoniae Cp1015

39.167

97.561

0.382
  pilG Acinetobacter baumannii strain A118

40.351

92.683

0.374
  vicR Streptococcus mutans UA159

38.333

97.561

0.374
  pilL-C Synechocystis sp. PCC 6803

37.19

98.374

0.366