Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   HEP73_RS02310 Genome accession   NZ_CP051189
Coordinates   518808..520373 (-) Length   521 a.a.
NCBI ID   WP_255423643.1    Uniprot ID   A0A7G7SS41
Organism   Xanthomonas sp. GW     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 513808..525373
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HEP73_RS02290 (HEP73_00449) - 514901..515410 (+) 510 WP_255423642.1 preprotein translocase subunit SecD -
  HEP73_RS02295 (HEP73_00450) ubiA 515871..516773 (-) 903 WP_185821966.1 4-hydroxybenzoate octaprenyltransferase -
  HEP73_RS02305 (HEP73_00452) - 517654..518484 (+) 831 WP_185821967.1 alpha/beta fold hydrolase -
  HEP73_RS02310 (HEP73_00453) comM 518808..520373 (-) 1566 WP_255423643.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  HEP73_RS02315 (HEP73_00454) - 520387..520656 (-) 270 WP_185821968.1 accessory factor UbiK family protein -
  HEP73_RS02320 (HEP73_00455) - 520833..521171 (+) 339 WP_003480503.1 P-II family nitrogen regulator -
  HEP73_RS02330 (HEP73_00456) - 522056..524044 (+) 1989 WP_185823261.1 beta-N-acetylglucosaminidase domain-containing protein -
  HEP73_RS02335 (HEP73_00457) - 524239..524970 (-) 732 WP_185821970.1 hypothetical protein -

Sequence

Protein


Download         Length: 521 a.a.        Molecular weight: 55121.90 Da        Isoelectric Point: 8.7735

>NTDB_id=436726 HEP73_RS02310 WP_255423643.1 518808..520373(-) (comM) [Xanthomonas sp. GW]
MSLALVHSRARAGVLAPPVRVEVHLSGGLPATQIVGLPEAAVRESRDRVRAAILCAQYEFPARRITVNLAPADLPKEGGR
FDLPIALGILAAAGQLDPQALGNYEFLGELALTGELRAVDGVLPAALAAAQAGRTLIVPAGNGPEAALAQHVQAFTARTL
LEVCALLNGTKTLPAAEALPAAATPFPDLSDVRGQAQARRALEIAAAGHHHLLLIGSPGCGKTLLASRLPGILPEASEAE
ALEAAAIASVSGRGLDPSRWRQRPYRSPHHTASAVSLVGGGTHPRPGEISLAHRGVLFLDELPEWNRHALEVLREPLESG
TVTVSRAARSAEFPARFQLVAAMNPCPCGWAGDASGRCRCSDDSIRRYRARISGPLLDRIDLHVDVPRLPPQALRADASP
GESSAAVRARVEQARQRQLARAGCPNGQLGHSETLRDCRLQPRDEALLEHAIDRLRLSARSLHRILRVARTIADLAGSDA
IATAHLTEAIGYRQLDRGEPAAPQADSFARAGEARRGAIAR

Nucleotide


Download         Length: 1566 bp        

>NTDB_id=436726 HEP73_RS02310 WP_255423643.1 518808..520373(-) (comM) [Xanthomonas sp. GW]
ATGAGCCTGGCGCTGGTGCACAGCCGTGCCCGCGCGGGGGTGCTTGCGCCTCCGGTTCGGGTCGAGGTCCATCTGTCCGG
CGGCCTGCCGGCGACGCAGATCGTCGGCCTGCCCGAGGCCGCGGTACGCGAATCGCGCGATCGCGTGCGTGCCGCCATCC
TATGCGCGCAATACGAATTTCCGGCGCGGCGCATCACCGTCAACCTGGCCCCGGCCGACCTGCCCAAGGAAGGCGGCCGC
TTCGACCTGCCGATCGCGCTGGGCATCCTCGCCGCCGCCGGGCAACTCGACCCGCAGGCGCTGGGCAACTACGAATTCCT
CGGCGAACTGGCCTTGACCGGCGAGCTGCGTGCCGTGGACGGCGTGCTGCCGGCGGCGCTGGCCGCCGCCCAAGCCGGGC
GCACGCTGATCGTGCCGGCCGGCAACGGTCCCGAAGCGGCGCTGGCGCAGCACGTGCAGGCGTTCACCGCGCGTACCCTG
CTCGAAGTCTGCGCACTGTTGAACGGCACCAAGACCCTGCCCGCCGCCGAAGCGCTGCCGGCCGCGGCCACGCCGTTTCC
CGACCTGAGCGACGTGCGCGGGCAAGCGCAGGCACGGCGGGCGCTGGAGATCGCCGCGGCCGGTCATCACCATCTGTTGT
TGATCGGCAGCCCGGGCTGCGGCAAGACCCTGCTGGCCTCGCGCCTGCCCGGCATCCTGCCCGAGGCCAGCGAGGCCGAG
GCGCTGGAAGCGGCGGCGATCGCCTCGGTCAGCGGCCGCGGACTGGATCCATCGCGCTGGCGGCAACGCCCCTACCGATC
CCCGCACCACACCGCCAGCGCGGTATCGCTGGTCGGCGGCGGCACCCACCCGCGCCCCGGCGAGATCTCGCTGGCGCATC
GCGGCGTCTTGTTCCTCGACGAACTGCCCGAGTGGAACAGGCACGCGCTGGAAGTGCTGCGCGAGCCGCTGGAATCGGGC
ACGGTCACGGTGTCGCGAGCCGCGCGCAGCGCCGAGTTCCCGGCCCGGTTCCAACTGGTCGCAGCGATGAACCCCTGCCC
TTGTGGCTGGGCCGGCGACGCCAGCGGCCGTTGCCGCTGCAGCGACGACAGCATCCGCCGCTACCGCGCGCGCATCTCCG
GTCCGTTGCTGGACCGCATCGACCTGCACGTGGACGTACCGCGACTGCCGCCGCAAGCGCTGCGCGCCGATGCCTCTCCC
GGCGAGAGCAGCGCCGCCGTGCGCGCGCGGGTGGAGCAGGCGCGGCAACGCCAGCTGGCGCGCGCCGGCTGCCCCAACGG
CCAGCTCGGCCACAGCGAGACCTTGCGCGACTGCCGCCTGCAACCGCGCGACGAAGCGCTGCTGGAACACGCCATCGACC
GCCTGCGCCTGTCGGCGCGCTCCTTGCACCGCATCCTGCGCGTGGCGCGCACCATCGCCGACCTGGCCGGAAGCGATGCG
ATCGCCACTGCGCACCTGACCGAAGCGATCGGCTACCGGCAACTGGATCGCGGCGAGCCCGCAGCGCCGCAAGCGGACTC
ATTTGCGCGCGCAGGCGAAGCGCGGCGCGGTGCGATAGCGCGCTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(188-392)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-493)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7G7SS41

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

56.513

95.777

0.541
  comM Vibrio campbellii strain DS40M4

54.98

96.353

0.53
  comM Haemophilus influenzae Rd KW20

54.365

96.737

0.526
  comM Glaesserella parasuis strain SC1401

53.571

96.737

0.518
  comM Legionella pneumophila str. Paris

50.595

96.737

0.489
  comM Legionella pneumophila strain ERS1305867

50.595

96.737

0.489
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

44.97

97.313

0.438