Detailed information
Bioinformatically predicted
Overview
| Name | ruvB | Type | Machinery gene |
| Locus tag | INP94_RS05515 | Genome accession | NZ_CP063120 |
| Coordinates | 1120107..1121114 (+) | Length | 335 a.a. |
| NCBI ID | WP_197542952.1 | Uniprot ID | - |
| Organism | Haemophilus parainfluenzae strain M1C137_2 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Genomic Context
Location: 1115107..1126114
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| INP94_RS05480 (INP94_05480) | - | 1115275..1116543 (+) | 1269 | WP_197542948.1 | NRAMP family divalent metal transporter | - |
| INP94_RS05485 (INP94_05485) | nudB | 1116645..1117103 (+) | 459 | WP_197542949.1 | dihydroneopterin triphosphate diphosphatase | - |
| INP94_RS05490 (INP94_05490) | - | 1117153..1117893 (+) | 741 | WP_005696686.1 | YebC/PmpR family DNA-binding transcriptional regulator | - |
| INP94_RS05495 (INP94_05495) | - | 1117912..1118334 (+) | 423 | WP_197542950.1 | hypothetical protein | - |
| INP94_RS05500 (INP94_05500) | - | 1118365..1118799 (+) | 435 | WP_049376483.1 | hypothetical protein | - |
| INP94_RS05505 (INP94_05505) | ruvC | 1118851..1119423 (+) | 573 | WP_197542951.1 | crossover junction endodeoxyribonuclease RuvC | - |
| INP94_RS05510 (INP94_05510) | ruvA | 1119482..1120093 (+) | 612 | WP_049366387.1 | Holliday junction branch migration protein RuvA | Machinery gene |
| INP94_RS05515 (INP94_05515) | ruvB | 1120107..1121114 (+) | 1008 | WP_197542952.1 | Holliday junction branch migration DNA helicase RuvB | Machinery gene |
| INP94_RS05520 (INP94_05520) | - | 1121170..1121481 (-) | 312 | WP_005696680.1 | DUF5339 domain-containing protein | - |
| INP94_RS05525 (INP94_05525) | - | 1121943..1123508 (+) | 1566 | WP_005696679.1 | cytochrome ubiquinol oxidase subunit I | - |
| INP94_RS05530 (INP94_05530) | cydB | 1123523..1124662 (+) | 1140 | WP_197542953.1 | cytochrome d ubiquinol oxidase subunit II | - |
| INP94_RS05535 (INP94_05535) | - | 1124674..1124772 (+) | 99 | WP_101494276.1 | cytochrome bd oxidase small subunit, CydX/CbdX family | - |
| INP94_RS05540 (INP94_05540) | ybgE | 1124775..1125062 (+) | 288 | WP_197544271.1 | cyd operon protein YbgE | - |
| INP94_RS05545 (INP94_05545) | ybgC | 1125134..1125562 (+) | 429 | WP_178162665.1 | tol-pal system-associated acyl-CoA thioesterase | - |
Sequence
Protein
Download Length: 335 a.a. Molecular weight: 37222.66 Da Isoelectric Point: 4.7981
>NTDB_id=436698 INP94_RS05515 WP_197542952.1 1120107..1121114(+) (ruvB) [Haemophilus parainfluenzae strain M1C137_2]
MIEADRIISSQAKMDEDVIDRAIRPKLLADYVGQPQVREQMDIFIKAAKLRQDALDHLLIFGPPGLGKTTLANIVANEMG
VNIRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSPAIEEVLYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLIGA
TTRAGSLTSPLRDRFGIVQRLEFYSVEDLTSIVTRSAFCLNLELEDKAAFEVARRSRGTPRIANRLLRRVRDFADVRNDG
IISADIAKQALSMLDVDDAGFDYLDRKLLTAVIERFDGGPVGLDNLAAAIGEERDTIEDVLEPYLIQQGFLQRTPRGRIA
TSLTYRHFGLHKPSE
MIEADRIISSQAKMDEDVIDRAIRPKLLADYVGQPQVREQMDIFIKAAKLRQDALDHLLIFGPPGLGKTTLANIVANEMG
VNIRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSPAIEEVLYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLIGA
TTRAGSLTSPLRDRFGIVQRLEFYSVEDLTSIVTRSAFCLNLELEDKAAFEVARRSRGTPRIANRLLRRVRDFADVRNDG
IISADIAKQALSMLDVDDAGFDYLDRKLLTAVIERFDGGPVGLDNLAAAIGEERDTIEDVLEPYLIQQGFLQRTPRGRIA
TSLTYRHFGLHKPSE
Nucleotide
Download Length: 1008 bp
>NTDB_id=436698 INP94_RS05515 WP_197542952.1 1120107..1121114(+) (ruvB) [Haemophilus parainfluenzae strain M1C137_2]
ATGATCGAAGCAGATAGAATTATTAGCAGTCAGGCAAAAATGGATGAAGATGTCATCGATCGTGCGATTCGTCCAAAGCT
TTTAGCCGACTATGTGGGACAGCCACAAGTGCGAGAGCAGATGGATATTTTCATCAAGGCCGCAAAGTTACGTCAAGATG
CCTTAGATCATCTTTTGATCTTTGGCCCTCCAGGTTTAGGAAAAACAACGCTTGCTAATATTGTGGCAAATGAAATGGGT
GTGAATATCCGCACCACATCAGGGCCCGTACTTGAAAAAGCGGGCGATTTAGCGGCAATGCTGACAAATCTTGAACCGCA
TGATGTGTTGTTTATTGATGAAATTCACCGTCTTTCCCCTGCGATTGAAGAAGTGCTTTATCCAGCAATGGAAGATTATC
AGCTGGATATTATGATTGGTGAAGGGCCAGCAGCTCGTTCAATTAAATTGGATTTGCCACCTTTCACATTAATTGGCGCA
ACAACTCGGGCTGGTTCGTTAACTTCGCCACTACGTGATCGTTTCGGTATCGTTCAACGTTTAGAATTTTATTCCGTTGA
GGATTTAACGTCTATTGTGACAAGAAGTGCCTTTTGCTTAAATCTAGAATTAGAAGATAAAGCGGCTTTTGAAGTCGCTC
GTCGTTCACGTGGTACGCCTCGTATTGCAAACCGTTTATTGCGTCGCGTTCGAGATTTTGCTGATGTGCGTAATGATGGC
ATTATTTCGGCAGACATTGCGAAACAAGCGCTTTCAATGTTAGATGTAGATGATGCGGGCTTTGATTACTTAGATAGAAA
ATTGCTTACCGCTGTAATTGAGCGTTTTGATGGTGGGCCAGTTGGATTAGATAACTTGGCAGCGGCAATAGGTGAAGAAC
GAGACACTATCGAAGATGTGCTAGAACCCTATTTGATCCAACAAGGCTTTTTACAGCGTACGCCTCGAGGGCGAATTGCG
ACTTCGTTAACTTATCGACACTTCGGACTTCATAAGCCGTCAGAATAA
ATGATCGAAGCAGATAGAATTATTAGCAGTCAGGCAAAAATGGATGAAGATGTCATCGATCGTGCGATTCGTCCAAAGCT
TTTAGCCGACTATGTGGGACAGCCACAAGTGCGAGAGCAGATGGATATTTTCATCAAGGCCGCAAAGTTACGTCAAGATG
CCTTAGATCATCTTTTGATCTTTGGCCCTCCAGGTTTAGGAAAAACAACGCTTGCTAATATTGTGGCAAATGAAATGGGT
GTGAATATCCGCACCACATCAGGGCCCGTACTTGAAAAAGCGGGCGATTTAGCGGCAATGCTGACAAATCTTGAACCGCA
TGATGTGTTGTTTATTGATGAAATTCACCGTCTTTCCCCTGCGATTGAAGAAGTGCTTTATCCAGCAATGGAAGATTATC
AGCTGGATATTATGATTGGTGAAGGGCCAGCAGCTCGTTCAATTAAATTGGATTTGCCACCTTTCACATTAATTGGCGCA
ACAACTCGGGCTGGTTCGTTAACTTCGCCACTACGTGATCGTTTCGGTATCGTTCAACGTTTAGAATTTTATTCCGTTGA
GGATTTAACGTCTATTGTGACAAGAAGTGCCTTTTGCTTAAATCTAGAATTAGAAGATAAAGCGGCTTTTGAAGTCGCTC
GTCGTTCACGTGGTACGCCTCGTATTGCAAACCGTTTATTGCGTCGCGTTCGAGATTTTGCTGATGTGCGTAATGATGGC
ATTATTTCGGCAGACATTGCGAAACAAGCGCTTTCAATGTTAGATGTAGATGATGCGGGCTTTGATTACTTAGATAGAAA
ATTGCTTACCGCTGTAATTGAGCGTTTTGATGGTGGGCCAGTTGGATTAGATAACTTGGCAGCGGCAATAGGTGAAGAAC
GAGACACTATCGAAGATGTGCTAGAACCCTATTTGATCCAACAAGGCTTTTTACAGCGTACGCCTCGAGGGCGAATTGCG
ACTTCGTTAACTTATCGACACTTCGGACTTCATAAGCCGTCAGAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ruvB | Bacillus subtilis subsp. subtilis str. 168 |
63.526 |
98.209 |
0.624 |
| ruvB | Streptococcus pneumoniae TIGR4 |
58.951 |
96.716 |
0.57 |
| ruvB | Streptococcus pneumoniae R6 |
58.951 |
96.716 |
0.57 |
| ruvB | Streptococcus pneumoniae D39 |
58.951 |
96.716 |
0.57 |
| ruvB | Helicobacter pylori 26695 |
55.921 |
90.746 |
0.507 |
| ruvB | Synechocystis sp. PCC 6803 |
53.994 |
93.433 |
0.504 |