Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   INP94_RS05510 Genome accession   NZ_CP063120
Coordinates   1119482..1120093 (+) Length   203 a.a.
NCBI ID   WP_049366387.1    Uniprot ID   -
Organism   Haemophilus parainfluenzae strain M1C137_2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1114482..1125093
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  INP94_RS05480 (INP94_05480) - 1115275..1116543 (+) 1269 WP_197542948.1 NRAMP family divalent metal transporter -
  INP94_RS05485 (INP94_05485) nudB 1116645..1117103 (+) 459 WP_197542949.1 dihydroneopterin triphosphate diphosphatase -
  INP94_RS05490 (INP94_05490) - 1117153..1117893 (+) 741 WP_005696686.1 YebC/PmpR family DNA-binding transcriptional regulator -
  INP94_RS05495 (INP94_05495) - 1117912..1118334 (+) 423 WP_197542950.1 hypothetical protein -
  INP94_RS05500 (INP94_05500) - 1118365..1118799 (+) 435 WP_049376483.1 hypothetical protein -
  INP94_RS05505 (INP94_05505) ruvC 1118851..1119423 (+) 573 WP_197542951.1 crossover junction endodeoxyribonuclease RuvC -
  INP94_RS05510 (INP94_05510) ruvA 1119482..1120093 (+) 612 WP_049366387.1 Holliday junction branch migration protein RuvA Machinery gene
  INP94_RS05515 (INP94_05515) ruvB 1120107..1121114 (+) 1008 WP_197542952.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  INP94_RS05520 (INP94_05520) - 1121170..1121481 (-) 312 WP_005696680.1 DUF5339 domain-containing protein -
  INP94_RS05525 (INP94_05525) - 1121943..1123508 (+) 1566 WP_005696679.1 cytochrome ubiquinol oxidase subunit I -
  INP94_RS05530 (INP94_05530) cydB 1123523..1124662 (+) 1140 WP_197542953.1 cytochrome d ubiquinol oxidase subunit II -
  INP94_RS05535 (INP94_05535) - 1124674..1124772 (+) 99 WP_101494276.1 cytochrome bd oxidase small subunit, CydX/CbdX family -
  INP94_RS05540 (INP94_05540) ybgE 1124775..1125062 (+) 288 WP_197544271.1 cyd operon protein YbgE -

Sequence

Protein


Download         Length: 203 a.a.        Molecular weight: 22524.32 Da        Isoelectric Point: 6.7418

>NTDB_id=436697 INP94_RS05510 WP_049366387.1 1119482..1120093(+) (ruvA) [Haemophilus parainfluenzae strain M1C137_2]
MIGRLKGILLEKQPPEILLDVQGVGYELLLPMTSFYDLPEIGQETTLFTHLVVREDAHLLFGFAQKTDRTLFRELIKTNG
VGPKLALAILSAMSVEQFAYAIEREELSKLVKIPGVGKKTAERLLVELKGKFKDVRQSDFFVESKHIPSTSELRQAESSA
DEAIAALIALGYKPTDAEKMVKKVAKADLTSEQLIREALKAAL

Nucleotide


Download         Length: 612 bp        

>NTDB_id=436697 INP94_RS05510 WP_049366387.1 1119482..1120093(+) (ruvA) [Haemophilus parainfluenzae strain M1C137_2]
ATGATCGGTCGTTTAAAAGGCATCTTATTAGAAAAACAACCTCCTGAAATTTTGCTTGATGTACAAGGCGTCGGTTACGA
ATTATTGTTACCGATGACCAGTTTTTATGATTTACCAGAAATCGGGCAAGAAACTACTTTATTTACCCATCTTGTTGTGC
GTGAAGATGCTCATCTTCTTTTTGGATTTGCCCAAAAAACTGACCGCACTTTATTCCGTGAATTAATTAAAACCAATGGT
GTTGGACCTAAATTGGCACTCGCAATTTTATCAGCTATGTCAGTAGAGCAGTTTGCTTATGCTATTGAACGAGAAGAACT
GTCAAAATTAGTTAAAATTCCTGGTGTGGGCAAGAAAACGGCTGAACGTTTATTGGTGGAGTTAAAAGGGAAGTTTAAGG
ATGTTCGTCAAAGTGATTTCTTTGTGGAGAGCAAACATATTCCTTCAACTTCAGAATTACGCCAAGCTGAAAGCTCAGCA
GATGAAGCGATTGCTGCATTGATTGCATTAGGCTATAAACCAACCGATGCTGAAAAAATGGTGAAAAAAGTGGCTAAAGC
AGACTTAACCAGTGAGCAATTAATTCGCGAAGCTTTAAAAGCCGCATTATAA

Domains

Predicted by InterProScan.

RuvA N terminal domain (RuvA_N)

(1-62)

Helix-hairpin-helix domain (HHH_5)

(72-129)

RuvA, C-terminal domain (RuvA_C)

(160-201)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Bacillus subtilis subsp. subtilis str. 168

37.915

100

0.394