Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvB   Type   Machinery gene
Locus tag   INP95_RS05005 Genome accession   NZ_CP063117
Coordinates   1032609..1033616 (+) Length   335 a.a.
NCBI ID   WP_070775702.1    Uniprot ID   -
Organism   Haemophilus parainfluenzae strain M1C142_1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1027609..1038616
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  INP95_RS04975 (INP95_04975) - 1028233..1029501 (+) 1269 WP_197560245.1 NRAMP family divalent metal transporter -
  INP95_RS04980 (INP95_04980) nudB 1029603..1030061 (+) 459 WP_197560246.1 dihydroneopterin triphosphate diphosphatase -
  INP95_RS04985 (INP95_04985) - 1030109..1030849 (+) 741 WP_197560247.1 YebC/PmpR family DNA-binding transcriptional regulator -
  INP95_RS04990 (INP95_04990) - 1030867..1031301 (+) 435 WP_049372933.1 hypothetical protein -
  INP95_RS04995 (INP95_04995) ruvC 1031353..1031925 (+) 573 WP_049366388.1 crossover junction endodeoxyribonuclease RuvC -
  INP95_RS05000 (INP95_05000) ruvA 1031984..1032595 (+) 612 WP_197560248.1 Holliday junction branch migration protein RuvA Machinery gene
  INP95_RS05005 (INP95_05005) ruvB 1032609..1033616 (+) 1008 WP_070775702.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  INP95_RS05010 (INP95_05010) - 1033673..1033993 (-) 321 WP_049364495.1 DUF5339 domain-containing protein -
  INP95_RS05015 (INP95_05015) - 1034452..1036017 (+) 1566 WP_049384296.1 cytochrome ubiquinol oxidase subunit I -
  INP95_RS05020 (INP95_05020) cydB 1036032..1037171 (+) 1140 WP_197560249.1 cytochrome d ubiquinol oxidase subunit II -
  INP95_RS05025 (INP95_05025) ybgE 1037284..1037571 (+) 288 WP_049381656.1 cyd operon protein YbgE -
  INP95_RS05030 (INP95_05030) ybgC 1037643..1038071 (+) 429 WP_197560250.1 tol-pal system-associated acyl-CoA thioesterase -

Sequence

Protein


Download         Length: 335 a.a.        Molecular weight: 37167.58 Da        Isoelectric Point: 4.7327

>NTDB_id=436635 INP95_RS05005 WP_070775702.1 1032609..1033616(+) (ruvB) [Haemophilus parainfluenzae strain M1C142_1]
MIEADRIISSQAKMDEDVIDRAIRPKLLADYVGQPQVREQMDIFIKAAKLRQDALDHLLIFGPPGLGKTTLANIVANEMG
VNIRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSPAIEEVLYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLIGA
TTRAGSLTSPLRDRFGIVQRLEFYSVEDLTSIVTRSASCLNLELEDKAAFEVARRSRGTPRIANRLLRRVRDFADVRNDG
IISADIAKQALSMLDIDDAGFDYLDRKLLTAVIERFDGGPVGLDNLAAAIGEERDTIEDVLEPYLIQQGFLQRTPRGRIA
TSLTYRHFGLQKPSE

Nucleotide


Download         Length: 1008 bp        

>NTDB_id=436635 INP95_RS05005 WP_070775702.1 1032609..1033616(+) (ruvB) [Haemophilus parainfluenzae strain M1C142_1]
ATGATCGAAGCAGATAGAATTATTAGCAGTCAGGCAAAGATGGATGAAGATGTCATCGATCGTGCGATTCGTCCAAAGCT
TTTAGCGGACTATGTGGGGCAGCCACAAGTGCGAGAGCAGATGGATATTTTCATTAAGGCGGCAAAACTGCGTCAAGATG
CCTTAGATCATCTTTTGATCTTCGGCCCTCCAGGTTTAGGAAAAACGACGCTAGCTAATATTGTGGCAAATGAAATGGGT
GTGAATATTCGCACAACATCAGGGCCTGTGCTTGAAAAAGCCGGCGATTTAGCGGCAATGCTGACAAATCTTGAACCCCA
TGATGTGTTGTTTATTGATGAAATTCATCGTCTTTCCCCTGCGATTGAAGAAGTGCTTTATCCAGCAATGGAAGATTATC
AGCTGGATATTATGATCGGTGAAGGCCCTGCTGCACGCTCAATTAAATTAGATTTGCCACCTTTCACATTAATTGGTGCA
ACAACTCGAGCGGGTTCTTTAACTTCACCATTACGAGATCGTTTTGGTATTGTTCAGCGTTTAGAATTTTATTCCGTTGA
AGATTTAACTTCTATTGTGACAAGAAGTGCCTCTTGCTTAAATCTAGAATTAGAAGATAAAGCGGCTTTTGAAGTGGCTC
GTCGTTCGCGTGGAACCCCTCGCATTGCAAACCGTTTATTGCGTCGCGTTCGAGATTTTGCTGATGTACGTAATGATGGC
ATTATTTCGGCAGACATCGCGAAACAAGCACTTTCAATGTTAGATATAGATGATGCGGGCTTTGATTACTTAGATAGAAA
ATTGCTTACCGCAGTGATTGAACGTTTTGATGGTGGGCCAGTTGGGTTAGATAACTTGGCAGCAGCAATAGGTGAAGAAC
GAGACACTATCGAGGATGTTTTAGAACCTTATTTGATTCAACAAGGATTTTTACAGCGAACCCCTCGAGGCCGAATTGCG
ACTTCGTTAACTTATCGACACTTCGGACTTCAGAAGCCGTCAGAATAA

Domains

Predicted by InterProScan.

Holliday junction DNA helicase RuvB P-loop domain (RuvB_N)

(23-181)

RuvB AAA lid domain (AAA_lid_4)

(184-257)

RuvB C-terminal winged helix domain (WHD_RuvB)

(259-328)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvB Bacillus subtilis subsp. subtilis str. 168

63.222

98.209

0.621
  ruvB Streptococcus pneumoniae TIGR4

58.282

97.313

0.567
  ruvB Streptococcus pneumoniae R6

58.282

97.313

0.567
  ruvB Streptococcus pneumoniae D39

58.282

97.313

0.567
  ruvB Helicobacter pylori 26695

55.592

90.746

0.504
  ruvB Synechocystis sp. PCC 6803

53.674

93.433

0.501