Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   INP95_RS05000 Genome accession   NZ_CP063117
Coordinates   1031984..1032595 (+) Length   203 a.a.
NCBI ID   WP_197560248.1    Uniprot ID   -
Organism   Haemophilus parainfluenzae strain M1C142_1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1026984..1037595
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  INP95_RS04970 (INP95_04970) - 1027561..1027956 (+) 396 WP_197560244.1 hypothetical protein -
  INP95_RS04975 (INP95_04975) - 1028233..1029501 (+) 1269 WP_197560245.1 NRAMP family divalent metal transporter -
  INP95_RS04980 (INP95_04980) nudB 1029603..1030061 (+) 459 WP_197560246.1 dihydroneopterin triphosphate diphosphatase -
  INP95_RS04985 (INP95_04985) - 1030109..1030849 (+) 741 WP_197560247.1 YebC/PmpR family DNA-binding transcriptional regulator -
  INP95_RS04990 (INP95_04990) - 1030867..1031301 (+) 435 WP_049372933.1 hypothetical protein -
  INP95_RS04995 (INP95_04995) ruvC 1031353..1031925 (+) 573 WP_049366388.1 crossover junction endodeoxyribonuclease RuvC -
  INP95_RS05000 (INP95_05000) ruvA 1031984..1032595 (+) 612 WP_197560248.1 Holliday junction branch migration protein RuvA Machinery gene
  INP95_RS05005 (INP95_05005) ruvB 1032609..1033616 (+) 1008 WP_070775702.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  INP95_RS05010 (INP95_05010) - 1033673..1033993 (-) 321 WP_049364495.1 DUF5339 domain-containing protein -
  INP95_RS05015 (INP95_05015) - 1034452..1036017 (+) 1566 WP_049384296.1 cytochrome ubiquinol oxidase subunit I -
  INP95_RS05020 (INP95_05020) cydB 1036032..1037171 (+) 1140 WP_197560249.1 cytochrome d ubiquinol oxidase subunit II -
  INP95_RS05025 (INP95_05025) ybgE 1037284..1037571 (+) 288 WP_049381656.1 cyd operon protein YbgE -

Sequence

Protein


Download         Length: 203 a.a.        Molecular weight: 22526.29 Da        Isoelectric Point: 6.7418

>NTDB_id=436634 INP95_RS05000 WP_197560248.1 1031984..1032595(+) (ruvA) [Haemophilus parainfluenzae strain M1C142_1]
MIGRLKGILLEKQPPEILLDVQGVGYELLLPMTSFYDLPEIGQETTLFTHLVVREDAHLLFGFAQKTDRTLFRELIKTNG
VGPKLALAILSAMSVEQFAYAIEREELSKLVKIPGVGKKTAERLLVELKGKFKDVRQSDFFVESKHIPSTSELRQAESST
DEAIAALVALGYKPTDAEKMVKKVAKADLSSEQLIREALKAAL

Nucleotide


Download         Length: 612 bp        

>NTDB_id=436634 INP95_RS05000 WP_197560248.1 1031984..1032595(+) (ruvA) [Haemophilus parainfluenzae strain M1C142_1]
ATGATCGGTCGTTTAAAAGGCATCTTATTAGAAAAACAACCTCCTGAAATTTTGCTTGATGTGCAAGGCGTAGGTTACGA
ATTATTGTTACCAATGACCAGTTTTTATGACTTACCTGAAATCGGGCAAGAAACCACTTTATTTACCCATCTTGTTGTGC
GTGAAGATGCTCATCTTCTTTTTGGATTCGCCCAAAAAACTGACCGCACTTTATTCCGTGAATTAATTAAAACCAATGGT
GTTGGTCCTAAATTGGCACTCGCAATTTTATCTGCAATGTCCGTAGAGCAATTTGCTTATGCTATTGAACGAGAAGAACT
GTCAAAATTAGTTAAAATTCCTGGTGTGGGCAAGAAAACGGCTGAACGTTTATTGGTAGAGTTAAAAGGGAAGTTTAAAG
ATGTTCGCCAAAGTGATTTCTTTGTGGAGAGCAAGCATATTCCTTCAACGTCAGAATTACGCCAAGCTGAAAGCTCTACA
GATGAAGCGATTGCTGCATTGGTTGCATTAGGTTATAAACCAACCGATGCTGAAAAAATGGTGAAAAAAGTCGCTAAAGC
GGATTTAAGCAGTGAGCAATTAATTCGCGAAGCCTTAAAAGCCGCATTATAA

Domains

Predicted by InterProScan.

Helix-hairpin-helix domain (HHH_5)

(72-129)

RuvA N terminal domain (RuvA_N)

(1-62)

RuvA, C-terminal domain (RuvA_C)

(160-201)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Bacillus subtilis subsp. subtilis str. 168

37.441

100

0.389