Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvB   Type   Machinery gene
Locus tag   INP96_RS04965 Genome accession   NZ_CP063116
Coordinates   1008961..1009968 (+) Length   335 a.a.
NCBI ID   WP_041918230.1    Uniprot ID   -
Organism   Haemophilus parainfluenzae strain M1C146_1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1003961..1014968
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  INP96_RS04935 (INP96_04935) - 1004586..1005854 (+) 1269 WP_014064903.1 NRAMP family divalent metal transporter -
  INP96_RS04940 (INP96_04940) nudB 1005956..1006414 (+) 459 WP_197555387.1 dihydroneopterin triphosphate diphosphatase -
  INP96_RS04945 (INP96_04945) - 1006462..1007202 (+) 741 WP_005697071.1 YebC/PmpR family DNA-binding transcriptional regulator -
  INP96_RS04950 (INP96_04950) - 1007220..1007654 (+) 435 WP_049369189.1 hypothetical protein -
  INP96_RS04955 (INP96_04955) ruvC 1007705..1008277 (+) 573 WP_197555388.1 crossover junction endodeoxyribonuclease RuvC -
  INP96_RS04960 (INP96_04960) ruvA 1008336..1008947 (+) 612 WP_049368011.1 Holliday junction branch migration protein RuvA Machinery gene
  INP96_RS04965 (INP96_04965) ruvB 1008961..1009968 (+) 1008 WP_041918230.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  INP96_RS04970 (INP96_04970) - 1010024..1010335 (-) 312 WP_049368010.1 DUF5339 domain-containing protein -
  INP96_RS04975 (INP96_04975) - 1010795..1012360 (+) 1566 WP_014064908.1 cytochrome ubiquinol oxidase subunit I -
  INP96_RS04980 (INP96_04980) cydB 1012375..1013514 (+) 1140 WP_197555389.1 cytochrome d ubiquinol oxidase subunit II -
  INP96_RS04985 (INP96_04985) ybgE 1013627..1013914 (+) 288 WP_111326586.1 cyd operon protein YbgE -
  INP96_RS04990 (INP96_04990) ybgC 1013986..1014414 (+) 429 WP_197555390.1 tol-pal system-associated acyl-CoA thioesterase -

Sequence

Protein


Download         Length: 335 a.a.        Molecular weight: 37153.55 Da        Isoelectric Point: 4.7327

>NTDB_id=436575 INP96_RS04965 WP_041918230.1 1008961..1009968(+) (ruvB) [Haemophilus parainfluenzae strain M1C146_1]
MIEADRIISSQAKMDEDVIDRAIRPKLLADYVGQPQVREQMDIFIKAAKLRQDALDHLLIFGPPGLGKTTLANIVANEMG
VNIRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSPAIEEVLYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLIGA
TTRAGSLTSPLRDRFGIVQRLEFYSVEDLTSIVTRSASCLNLELEDKAAFEVARRSRGTPRIANRLLRRVRDFADVRNDG
IISADIAKQALSMLDVDDAGFDYLDRKLLTAVIERFDGGPVGLDNLAAAIGEERDTIEDVLEPYLIQQGFLQRTPRGRIA
TSLTYRHFGLQKPSE

Nucleotide


Download         Length: 1008 bp        

>NTDB_id=436575 INP96_RS04965 WP_041918230.1 1008961..1009968(+) (ruvB) [Haemophilus parainfluenzae strain M1C146_1]
ATGATCGAAGCAGATAGAATTATTAGCAGTCAGGCAAAGATGGATGAAGATGTCATCGATCGTGCGATTCGTCCAAAGCT
TTTAGCGGACTATGTGGGACAGCCGCAAGTGCGAGAGCAAATGGATATTTTTATTAAGGCGGCAAAATTGCGTCAAGATG
CCTTAGATCATCTTTTGATCTTCGGCCCTCCAGGTTTAGGAAAAACGACGCTAGCTAATATTGTGGCAAATGAAATGGGT
GTGAATATTCGCACCACATCAGGGCCTGTGCTTGAAAAAGCAGGGGATTTGGCAGCAATGCTGACAAATCTTGAACCCCA
TGATGTGTTGTTTATTGATGAAATTCACCGTCTTTCCCCAGCGATTGAAGAAGTGCTTTATCCAGCAATGGAAGATTATC
AGTTGGATATTATGATCGGTGAAGGCCCTGCTGCACGCTCAATTAAATTGGATTTGCCACCTTTTACATTAATTGGTGCA
ACAACTCGAGCGGGTTCTTTAACTTCACCACTACGTGATCGTTTCGGTATCGTTCAACGTTTAGAATTTTATTCCGTTGA
AGATTTAACTTCTATTGTGACAAGAAGTGCCTCTTGCTTAAATCTGGAATTAGAAGATAAAGCCGCTTTTGAAGTGGCTC
GTCGTTCACGTGGCACCCCTCGCATTGCAAACCGTTTATTGCGTCGCGTTCGAGATTTTGCTGATGTACGTAATGATGGC
ATTATTTCGGCAGACATTGCGAAACAAGCACTTTCAATGTTAGATGTAGATGATGCGGGCTTTGATTACTTAGATAGAAA
ATTGCTTACCGCAGTGATTGAACGTTTTGATGGTGGACCAGTTGGGTTAGATAACTTGGCTGCAGCAATAGGTGAAGAAC
GAGACACTATCGAGGATGTTTTAGAACCTTACTTGATTCAACAAGGATTTTTACAGCGTACGCCTCGAGGCCGAATTGCG
ACCTCGTTAACTTATCGACACTTCGGACTTCAGAAGCCATCAGAATAA

Domains

Predicted by InterProScan.

Holliday junction DNA helicase RuvB P-loop domain (RuvB_N)

(23-181)

RuvB C-terminal winged helix domain (WHD_RuvB)

(259-328)

RuvB AAA lid domain (AAA_lid_4)

(184-257)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvB Bacillus subtilis subsp. subtilis str. 168

63.526

98.209

0.624
  ruvB Streptococcus pneumoniae TIGR4

58.589

97.313

0.57
  ruvB Streptococcus pneumoniae R6

58.589

97.313

0.57
  ruvB Streptococcus pneumoniae D39

58.589

97.313

0.57
  ruvB Helicobacter pylori 26695

55.921

90.746

0.507
  ruvB Synechocystis sp. PCC 6803

53.994

93.433

0.504