Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   INP96_RS04960 Genome accession   NZ_CP063116
Coordinates   1008336..1008947 (+) Length   203 a.a.
NCBI ID   WP_049368011.1    Uniprot ID   -
Organism   Haemophilus parainfluenzae strain M1C146_1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1003336..1013947
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  INP96_RS04930 (INP96_04930) - 1003882..1004262 (+) 381 WP_197555386.1 hypothetical protein -
  INP96_RS04935 (INP96_04935) - 1004586..1005854 (+) 1269 WP_014064903.1 NRAMP family divalent metal transporter -
  INP96_RS04940 (INP96_04940) nudB 1005956..1006414 (+) 459 WP_197555387.1 dihydroneopterin triphosphate diphosphatase -
  INP96_RS04945 (INP96_04945) - 1006462..1007202 (+) 741 WP_005697071.1 YebC/PmpR family DNA-binding transcriptional regulator -
  INP96_RS04950 (INP96_04950) - 1007220..1007654 (+) 435 WP_049369189.1 hypothetical protein -
  INP96_RS04955 (INP96_04955) ruvC 1007705..1008277 (+) 573 WP_197555388.1 crossover junction endodeoxyribonuclease RuvC -
  INP96_RS04960 (INP96_04960) ruvA 1008336..1008947 (+) 612 WP_049368011.1 Holliday junction branch migration protein RuvA Machinery gene
  INP96_RS04965 (INP96_04965) ruvB 1008961..1009968 (+) 1008 WP_041918230.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  INP96_RS04970 (INP96_04970) - 1010024..1010335 (-) 312 WP_049368010.1 DUF5339 domain-containing protein -
  INP96_RS04975 (INP96_04975) - 1010795..1012360 (+) 1566 WP_014064908.1 cytochrome ubiquinol oxidase subunit I -
  INP96_RS04980 (INP96_04980) cydB 1012375..1013514 (+) 1140 WP_197555389.1 cytochrome d ubiquinol oxidase subunit II -
  INP96_RS04985 (INP96_04985) ybgE 1013627..1013914 (+) 288 WP_111326586.1 cyd operon protein YbgE -

Sequence

Protein


Download         Length: 203 a.a.        Molecular weight: 22496.27 Da        Isoelectric Point: 6.7418

>NTDB_id=436574 INP96_RS04960 WP_049368011.1 1008336..1008947(+) (ruvA) [Haemophilus parainfluenzae strain M1C146_1]
MIGRLKGILLEKQPPEILLDVQGVGYELLLPMTSFYDLPEIGQETTLFTHLVVREDAHLLFGFAQKTDRTLFRELIKTNG
VGPKLALAILSAMSVEQFAYAIEREELSKLVKIPGVGKKTAERLLVELKGKFKDVRQSDFFVESKHIPSTSELRQAESSA
DEAVAALIALGYKPTDAEKMVKKVAKADLSSEQLIREALKAAL

Nucleotide


Download         Length: 612 bp        

>NTDB_id=436574 INP96_RS04960 WP_049368011.1 1008336..1008947(+) (ruvA) [Haemophilus parainfluenzae strain M1C146_1]
ATGATCGGTCGTTTGAAAGGTATCTTATTAGAAAAACAACCTCCTGAAATTTTGCTTGATGTACAAGGCGTCGGTTACGA
ATTATTGTTACCAATGACCAGTTTTTATGACTTACCAGAAATCGGGCAAGAAACCACTTTATTTACCCATCTTGTTGTGC
GTGAAGATGCACATCTTCTTTTTGGCTTTGCCCAAAAAACTGACCGCACTTTATTCCGTGAATTAATTAAAACCAATGGT
GTTGGTCCTAAATTGGCACTCGCAATTTTATCTGCAATGTCAGTAGAGCAGTTTGCTTACGCTATTGAACGAGAAGAACT
GTCGAAATTAGTTAAAATTCCTGGTGTGGGCAAGAAAACGGCTGAACGCTTATTGGTGGAGTTAAAAGGGAAGTTTAAAG
ATGTTCGCCAAAGTGATTTCTTTGTGGAGAGCAAGCATATTCCTTCAACTTCAGAATTACGTCAAGCGGAGAGCTCAGCT
GATGAAGCGGTTGCTGCGCTGATTGCGTTAGGCTATAAACCAACCGATGCTGAAAAAATGGTGAAAAAAGTAGCTAAAGC
GGATTTAAGCAGTGAGCAATTAATTCGTGAAGCCTTAAAAGCCGCATTATAA

Domains

Predicted by InterProScan.

RuvA, C-terminal domain (RuvA_C)

(160-201)

Helix-hairpin-helix domain (HHH_5)

(72-129)

RuvA N terminal domain (RuvA_N)

(1-62)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Bacillus subtilis subsp. subtilis str. 168

37.441

100

0.389