Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   HEQ85_RS24050 Genome accession   NZ_CP051168
Coordinates   5503676..5504041 (-) Length   121 a.a.
NCBI ID   WP_199250617.1    Uniprot ID   -
Organism   [Phormidium] sp. ETS-05     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5498676..5509041
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HEQ85_RS24030 - 5499159..5499446 (-) 288 WP_199247191.1 DUF3593 domain-containing protein -
  HEQ85_RS24035 - 5499479..5499799 (-) 321 WP_199250615.1 DUF2499 domain-containing protein -
  HEQ85_RS24040 - 5500001..5501587 (-) 1587 WP_199247192.1 HlyD family secretion protein -
  HEQ85_RS24045 - 5501618..5503483 (-) 1866 WP_233258393.1 hypothetical protein -
  HEQ85_RS24050 pilH 5503676..5504041 (-) 366 WP_199250617.1 response regulator transcription factor Machinery gene
  HEQ85_RS24055 - 5504818..5505939 (+) 1122 WP_199250618.1 methyl-accepting chemotaxis protein -
  HEQ85_RS24060 - 5506085..5506441 (-) 357 WP_199247193.1 translation initiation factor -
  HEQ85_RS24065 trpB 5506624..5507868 (+) 1245 WP_199247194.1 tryptophan synthase subunit beta -
  HEQ85_RS24070 - 5507880..5508410 (+) 531 WP_233258394.1 CAP domain-containing protein -

Sequence

Protein


Download         Length: 121 a.a.        Molecular weight: 13524.76 Da        Isoelectric Point: 5.8578

>NTDB_id=436527 HEQ85_RS24050 WP_199250617.1 5503676..5504041(-) (pilH) [[Phormidium] sp. ETS-05]
MNTVLLVEDSLTQQKMISDLLKDKGLNVTVASDGVEAIEKIQQQSPDLVVLDIVMPKMNGYEVCRRIKSTPTTQNIPVIM
CSAKAEEFDRYWGMKQGADAYIAKPFHPKELLGTVKQLLNT

Nucleotide


Download         Length: 366 bp        

>NTDB_id=436527 HEQ85_RS24050 WP_199250617.1 5503676..5504041(-) (pilH) [[Phormidium] sp. ETS-05]
ATGAATACAGTTCTGCTGGTGGAAGATAGCCTCACCCAACAAAAAATGATTTCAGACCTCCTTAAGGATAAAGGTCTCAA
CGTCACTGTGGCTAGTGATGGCGTAGAAGCGATCGAGAAAATTCAGCAACAGTCCCCGGACCTGGTGGTTTTGGATATCG
TGATGCCGAAAATGAACGGCTATGAGGTGTGTCGCCGCATCAAAAGCACTCCCACCACCCAAAATATTCCGGTAATTATG
TGTTCGGCGAAGGCGGAAGAGTTCGATCGCTACTGGGGTATGAAACAGGGAGCCGATGCCTACATCGCCAAACCCTTTCA
CCCCAAAGAACTCCTCGGCACCGTCAAACAGTTGCTTAATACCTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

74.38

100

0.744
  vicR Streptococcus mutans UA159

38.71

100

0.397
  micA Streptococcus pneumoniae Cp1015

38.71

100

0.397
  pilG Acinetobacter baumannii strain A118

40.678

97.521

0.397
  chpA Acinetobacter baumannii strain A118

38.793

95.868

0.372