Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   HEQ85_RS12150 Genome accession   NZ_CP051168
Coordinates   2808715..2809080 (-) Length   121 a.a.
NCBI ID   WP_199249870.1    Uniprot ID   -
Organism   [Phormidium] sp. ETS-05     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2803715..2814080
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HEQ85_RS12125 - 2805186..2805377 (-) 192 WP_199249865.1 hypothetical protein -
  HEQ85_RS12130 - 2805619..2805918 (+) 300 WP_233258764.1 ATP-binding protein -
  HEQ85_RS12135 - 2806016..2806582 (+) 567 WP_199249867.1 Uma2 family endonuclease -
  HEQ85_RS12140 dusB 2806772..2807779 (+) 1008 WP_199249868.1 tRNA dihydrouridine synthase DusB -
  HEQ85_RS12145 - 2808212..2808376 (+) 165 WP_199249869.1 hypothetical protein -
  HEQ85_RS12150 pilH 2808715..2809080 (-) 366 WP_199249870.1 response regulator transcription factor Machinery gene
  HEQ85_RS12155 - 2809181..2809450 (+) 270 WP_199249871.1 hypothetical protein -
  HEQ85_RS12160 - 2809694..2809849 (+) 156 WP_199249872.1 hypothetical protein -
  HEQ85_RS12165 - 2810053..2810298 (-) 246 WP_199249873.1 hypothetical protein -
  HEQ85_RS12170 - 2810419..2810640 (-) 222 WP_199249874.1 hypothetical protein -
  HEQ85_RS12175 - 2811001..2811192 (-) 192 WP_199249875.1 hypothetical protein -

Sequence

Protein


Download         Length: 121 a.a.        Molecular weight: 13578.93 Da        Isoelectric Point: 5.2161

>NTDB_id=436520 HEQ85_RS12150 WP_199249870.1 2808715..2809080(-) (pilH) [[Phormidium] sp. ETS-05]
MSTVLIVDDSSTVREMVSEILKKSGMVVIEAVDGVEAKDQIAANLPDLVVTDIVMPKMNGYELCRWIKNDPKAQKIPVIM
CTSKSEEFDRYWGMKQGADAYICKPFRPAELVQTIKQLLRG

Nucleotide


Download         Length: 366 bp        

>NTDB_id=436520 HEQ85_RS12150 WP_199249870.1 2808715..2809080(-) (pilH) [[Phormidium] sp. ETS-05]
ATGAGTACGGTTTTGATCGTGGATGACAGTTCCACGGTGCGCGAAATGGTATCGGAAATCCTCAAAAAGAGCGGCATGGT
GGTGATTGAGGCGGTGGATGGCGTGGAGGCAAAAGACCAAATTGCGGCCAATCTTCCCGATTTGGTGGTAACGGATATCG
TTATGCCGAAAATGAACGGCTATGAACTCTGCCGGTGGATTAAAAATGACCCCAAAGCCCAAAAGATTCCGGTGATTATG
TGTACTAGCAAAAGCGAGGAATTCGACCGCTACTGGGGAATGAAGCAAGGAGCCGATGCCTATATTTGCAAGCCTTTTCG
CCCTGCGGAACTGGTGCAAACTATTAAGCAACTGCTGCGCGGCTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

66.667

99.174

0.661
  pilL-C Synechocystis sp. PCC 6803

43.333

99.174

0.43
  pilG Acinetobacter baumannii strain A118

44.737

94.215

0.421
  chpA Acinetobacter baumannii strain A118

39.655

95.868

0.38
  scnR Streptococcus mutans UA159

37.288

97.521

0.364