Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   HCG48_RS23165 Genome accession   NZ_CP051167
Coordinates   5798117..5798491 (-) Length   124 a.a.
NCBI ID   WP_168571286.1    Uniprot ID   -
Organism   Oxynema aestuarii AP17     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5793117..5803491
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HCG48_RS23155 (HCG48_23155) - 5795787..5796725 (-) 939 WP_168571284.1 DMT family transporter -
  HCG48_RS23160 (HCG48_23160) - 5797060..5797950 (+) 891 WP_168571285.1 sugar phosphate nucleotidyltransferase -
  HCG48_RS23165 (HCG48_23165) pilH 5798117..5798491 (-) 375 WP_168571286.1 PleD family two-component system response regulator Machinery gene
  HCG48_RS23170 (HCG48_23170) - 5799567..5800145 (+) 579 WP_168571287.1 Uma2 family endonuclease -
  HCG48_RS23175 (HCG48_23175) - 5800255..5800899 (+) 645 WP_168571288.1 transaldolase family protein -
  HCG48_RS23180 (HCG48_23180) - 5800889..5801974 (-) 1086 WP_210437116.1 hypothetical protein -

Sequence

Protein


Download         Length: 124 a.a.        Molecular weight: 13852.09 Da        Isoelectric Point: 5.8630

>NTDB_id=436511 HCG48_RS23165 WP_168571286.1 5798117..5798491(-) (pilH) [Oxynema aestuarii AP17]
MSTVLIVDDSATAREMVAGLLKKIGLDVIEARDGVEAQEKLQGKLPDLVVMDIIMPRMNGYDLCRWLRRQPQGQNIPILM
CSSKSEEFDRYWGMKQGADAYITKPFHPSDLVGTVKQLLNTNAG

Nucleotide


Download         Length: 375 bp        

>NTDB_id=436511 HCG48_RS23165 WP_168571286.1 5798117..5798491(-) (pilH) [Oxynema aestuarii AP17]
ATGAGTACCGTTCTGATTGTAGACGACAGCGCAACCGCTAGAGAAATGGTTGCCGGACTTCTCAAAAAAATTGGCCTCGA
CGTGATCGAGGCCCGCGATGGTGTGGAAGCTCAAGAAAAATTGCAAGGGAAACTTCCCGATCTCGTTGTCATGGACATTA
TCATGCCTCGCATGAACGGCTACGACCTCTGCCGATGGCTCAGACGCCAGCCCCAAGGTCAAAATATCCCGATTTTAATG
TGTTCGAGTAAAAGTGAAGAATTCGATCGCTATTGGGGGATGAAACAAGGGGCTGATGCTTACATTACCAAGCCTTTTCA
TCCGTCCGATTTAGTGGGAACGGTCAAACAGTTACTCAATACCAACGCGGGTTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

63.025

95.968

0.605
  pilL-C Synechocystis sp. PCC 6803

42.017

95.968

0.403
  pilG Acinetobacter baumannii strain A118

39.831

95.161

0.379
  chpA Acinetobacter baumannii strain A118

38.793

93.548

0.363
  vicR Streptococcus mutans UA159

37.815

95.968

0.363