Detailed information
Bioinformatically predicted
Overview
| Name | ruvB | Type | Machinery gene |
| Locus tag | INQ00_RS05200 | Genome accession | NZ_CP063110 |
| Coordinates | 1055257..1056264 (+) | Length | 335 a.a. |
| NCBI ID | WP_041918230.1 | Uniprot ID | - |
| Organism | Haemophilus parainfluenzae strain M1C160_1 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Genomic Context
Location: 1050257..1061264
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| INQ00_RS05170 (INQ00_05175) | - | 1050882..1052150 (+) | 1269 | WP_014064903.1 | NRAMP family divalent metal transporter | - |
| INQ00_RS05175 (INQ00_05180) | nudB | 1052252..1052710 (+) | 459 | WP_197546413.1 | dihydroneopterin triphosphate diphosphatase | - |
| INQ00_RS05180 (INQ00_05185) | - | 1052758..1053498 (+) | 741 | WP_005697071.1 | YebC/PmpR family DNA-binding transcriptional regulator | - |
| INQ00_RS05185 (INQ00_05190) | - | 1053516..1053950 (+) | 435 | WP_049369189.1 | hypothetical protein | - |
| INQ00_RS05190 (INQ00_05195) | ruvC | 1054001..1054573 (+) | 573 | WP_005697069.1 | crossover junction endodeoxyribonuclease RuvC | - |
| INQ00_RS05195 (INQ00_05200) | ruvA | 1054632..1055243 (+) | 612 | WP_197546414.1 | Holliday junction branch migration protein RuvA | Machinery gene |
| INQ00_RS05200 (INQ00_05205) | ruvB | 1055257..1056264 (+) | 1008 | WP_041918230.1 | Holliday junction branch migration DNA helicase RuvB | Machinery gene |
| INQ00_RS05205 (INQ00_05210) | - | 1056320..1056631 (-) | 312 | WP_049368010.1 | DUF5339 domain-containing protein | - |
| INQ00_RS05210 (INQ00_05215) | - | 1057090..1058655 (+) | 1566 | WP_054418270.1 | cytochrome ubiquinol oxidase subunit I | - |
| INQ00_RS05215 (INQ00_05220) | cydB | 1058670..1059809 (+) | 1140 | WP_197546415.1 | cytochrome d ubiquinol oxidase subunit II | - |
| INQ00_RS05220 (INQ00_05225) | - | 1059821..1059919 (+) | 99 | WP_101494276.1 | cytochrome bd oxidase small subunit, CydX/CbdX family | - |
| INQ00_RS05225 (INQ00_05230) | ybgE | 1059922..1060209 (+) | 288 | WP_049381656.1 | cyd operon protein YbgE | - |
| INQ00_RS05230 (INQ00_05235) | ybgC | 1060281..1060709 (+) | 429 | WP_197546416.1 | tol-pal system-associated acyl-CoA thioesterase | - |
Sequence
Protein
Download Length: 335 a.a. Molecular weight: 37153.55 Da Isoelectric Point: 4.7327
>NTDB_id=436333 INQ00_RS05200 WP_041918230.1 1055257..1056264(+) (ruvB) [Haemophilus parainfluenzae strain M1C160_1]
MIEADRIISSQAKMDEDVIDRAIRPKLLADYVGQPQVREQMDIFIKAAKLRQDALDHLLIFGPPGLGKTTLANIVANEMG
VNIRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSPAIEEVLYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLIGA
TTRAGSLTSPLRDRFGIVQRLEFYSVEDLTSIVTRSASCLNLELEDKAAFEVARRSRGTPRIANRLLRRVRDFADVRNDG
IISADIAKQALSMLDVDDAGFDYLDRKLLTAVIERFDGGPVGLDNLAAAIGEERDTIEDVLEPYLIQQGFLQRTPRGRIA
TSLTYRHFGLQKPSE
MIEADRIISSQAKMDEDVIDRAIRPKLLADYVGQPQVREQMDIFIKAAKLRQDALDHLLIFGPPGLGKTTLANIVANEMG
VNIRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSPAIEEVLYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLIGA
TTRAGSLTSPLRDRFGIVQRLEFYSVEDLTSIVTRSASCLNLELEDKAAFEVARRSRGTPRIANRLLRRVRDFADVRNDG
IISADIAKQALSMLDVDDAGFDYLDRKLLTAVIERFDGGPVGLDNLAAAIGEERDTIEDVLEPYLIQQGFLQRTPRGRIA
TSLTYRHFGLQKPSE
Nucleotide
Download Length: 1008 bp
>NTDB_id=436333 INQ00_RS05200 WP_041918230.1 1055257..1056264(+) (ruvB) [Haemophilus parainfluenzae strain M1C160_1]
ATGATCGAAGCAGATAGAATTATTAGCAGTCAGGCAAAGATGGATGAAGATGTCATCGATCGTGCGATTCGTCCAAAGCT
TTTAGCAGACTATGTGGGACAGCCACAAGTGCGAGAGCAAATGGATATTTTCATTAAGGCGGCGAAATTGCGTCAAGATG
CCTTAGATCATCTTTTGATCTTCGGCCCTCCAGGTTTAGGAAAAACAACGCTAGCTAATATTGTGGCAAATGAAATGGGC
GTGAATATTCGCACAACATCAGGGCCTGTGCTTGAAAAAGCCGGCGATTTGGCAGCAATGCTGACAAATCTTGAACCCCA
TGATGTGTTGTTTATTGATGAAATTCACCGTCTTTCTCCTGCGATTGAAGAAGTGCTTTATCCAGCAATGGAAGATTATC
AGCTAGATATTATGATCGGAGAAGGGCCAGCGGCACGTTCAATTAAATTGGATTTACCACCTTTCACATTAATTGGTGCA
ACAACTCGAGCGGGTTCGTTAACTTCGCCACTACGTGATCGTTTTGGTATTGTTCAGCGTTTAGAATTTTATTCCGTTGA
AGATTTAACTTCTATTGTGACAAGAAGTGCCTCTTGCTTAAATCTAGAATTAGAAGATAAAGCCGCTTTTGAAGTGGCTC
GTCGTTCACGTGGCACACCTCGCATTGCAAACCGTTTATTGCGTCGCGTTCGAGATTTTGCTGATGTGCGTAATGATGGC
ATTATATCGGCAGACATTGCGAAGCAAGCGCTTTCAATGTTAGATGTAGATGATGCGGGCTTTGATTACTTAGATAGAAA
ATTGCTTACCGCAGTGATTGAACGTTTTGATGGTGGACCAGTTGGGTTAGATAACTTGGCTGCAGCAATAGGTGAAGAAC
GAGACACTATCGAGGATGTTTTAGAACCTTACTTGATTCAACAAGGATTTTTACAGCGTACGCCTCGAGGCCGAATTGCG
ACCTCGTTAACTTATCGACACTTCGGACTTCAGAAGCCGTCAGAATAA
ATGATCGAAGCAGATAGAATTATTAGCAGTCAGGCAAAGATGGATGAAGATGTCATCGATCGTGCGATTCGTCCAAAGCT
TTTAGCAGACTATGTGGGACAGCCACAAGTGCGAGAGCAAATGGATATTTTCATTAAGGCGGCGAAATTGCGTCAAGATG
CCTTAGATCATCTTTTGATCTTCGGCCCTCCAGGTTTAGGAAAAACAACGCTAGCTAATATTGTGGCAAATGAAATGGGC
GTGAATATTCGCACAACATCAGGGCCTGTGCTTGAAAAAGCCGGCGATTTGGCAGCAATGCTGACAAATCTTGAACCCCA
TGATGTGTTGTTTATTGATGAAATTCACCGTCTTTCTCCTGCGATTGAAGAAGTGCTTTATCCAGCAATGGAAGATTATC
AGCTAGATATTATGATCGGAGAAGGGCCAGCGGCACGTTCAATTAAATTGGATTTACCACCTTTCACATTAATTGGTGCA
ACAACTCGAGCGGGTTCGTTAACTTCGCCACTACGTGATCGTTTTGGTATTGTTCAGCGTTTAGAATTTTATTCCGTTGA
AGATTTAACTTCTATTGTGACAAGAAGTGCCTCTTGCTTAAATCTAGAATTAGAAGATAAAGCCGCTTTTGAAGTGGCTC
GTCGTTCACGTGGCACACCTCGCATTGCAAACCGTTTATTGCGTCGCGTTCGAGATTTTGCTGATGTGCGTAATGATGGC
ATTATATCGGCAGACATTGCGAAGCAAGCGCTTTCAATGTTAGATGTAGATGATGCGGGCTTTGATTACTTAGATAGAAA
ATTGCTTACCGCAGTGATTGAACGTTTTGATGGTGGACCAGTTGGGTTAGATAACTTGGCTGCAGCAATAGGTGAAGAAC
GAGACACTATCGAGGATGTTTTAGAACCTTACTTGATTCAACAAGGATTTTTACAGCGTACGCCTCGAGGCCGAATTGCG
ACCTCGTTAACTTATCGACACTTCGGACTTCAGAAGCCGTCAGAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ruvB | Bacillus subtilis subsp. subtilis str. 168 |
63.526 |
98.209 |
0.624 |
| ruvB | Streptococcus pneumoniae TIGR4 |
58.589 |
97.313 |
0.57 |
| ruvB | Streptococcus pneumoniae R6 |
58.589 |
97.313 |
0.57 |
| ruvB | Streptococcus pneumoniae D39 |
58.589 |
97.313 |
0.57 |
| ruvB | Helicobacter pylori 26695 |
55.921 |
90.746 |
0.507 |
| ruvB | Synechocystis sp. PCC 6803 |
53.994 |
93.433 |
0.504 |